mamba_envir.yaml

name: cnag
channels:
  - conda-forge
  - bioconda

dependencies:
  - snakemake
  - r-base
  - r-pheatmap
  - r-rcolorbrewer
  - r-ggplot2
  - r-gridextra
  - r-ggrepel
  - r-r.methodss3
  - r-ashr
  - r-gprofiler2
  - r-repr
  - r-data.table
  - r-statmod
  - bioconductor-biobase
  - bioconductor-genefilter
  - bioconductor-sva
  - bioconductor-deseq2
  - bioconductor-limma
  - bioconductor-edger
  - bioconductor-biocparallel
  - bioconductor-fgsea
  - bioconductor-biomart
  - star
  - rsem
  - trim-galore
  - fastqc
  - pandas