From 8a6be85599cd395328d514971d3ae19ee989cc64 Mon Sep 17 00:00:00 2001 From: "Juan E. Arango Ossa" Date: Mon, 22 Jan 2024 17:55:12 -0500 Subject: [PATCH] =?UTF-8?q?=F0=9F=94=A7=20run=20absolute=20paths=20in=20te?= =?UTF-8?q?sts?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- .github/workflows/ci.yml | 4 ++-- README.md | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 9e7343c..523dbab 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -24,8 +24,8 @@ jobs: run: | nextflow run main.nf -profile cloud \ --tumor TEST \ - --tumorBam tests/data/tumor.bam \ - --refGenome tests/data/reference.fasta \ + --tumorBam `pwd`/tests/data/tumor.bam \ + --refGenome `pwd`/tests/data/reference.fasta \ --outdir /app/results - name: Check result run: | diff --git a/README.md b/README.md index 37a4d38..1cf2a4b 100644 --- a/README.md +++ b/README.md @@ -53,5 +53,5 @@ sh tests/run_test.sh docker buildx create --name papaemmelab-builder --use # Build the image -docker buildx build --platform linux/amd64,linux/arm64 -t papaemmelab/purple:latest . --push +docker buildx build --platform linux/amd64,linux/arm64 -t papaemmelab/purple:v0.1.0 . --push ```