diff --git a/DESCRIPTION b/DESCRIPTION index 97989f8..13a54b7 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: scplotter Title: Publication Quality Plots for Single Cell Data Analysis -Version: 0.1.1 +Version: 0.1.0 Authors@R: person("Panwen", "Wang", , "pwwang@pwwang.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-4614-8970")) @@ -46,6 +46,8 @@ Suggests: metap LazyData: true LazyDataCompression: xz +Remotes: + ncborcherding/scRepertoire URL: https://github.com/pwwang/scplotter https://pwwang.github.io/scplotter/ BugReports: diff --git a/R/data.R b/R/data.R index 6cd10f3..6902d17 100644 --- a/R/data.R +++ b/R/data.R @@ -42,7 +42,7 @@ NULL #' #' @format A \code{Seurat} object. #' @concept data -#' @source \url{https://scvelo.readthedocs.io/scvelo.datasets.pancreas/} \url{https://github.com/theislab/scvelo_notebooks/raw/master/data/Pancreas/endocrinogenesis_day15.h5ad} +#' @source \url{https://scvelo.readthedocs.io/en/stable/scvelo.datasets.pancreas.html} \url{https://github.com/theislab/scvelo_notebooks/raw/master/data/Pancreas/endocrinogenesis_day15.h5ad} #' @examples #' \dontrun{ #' if (interactive()) { diff --git a/README.md b/README.md index efb3e45..2d980e2 100644 --- a/README.md +++ b/README.md @@ -71,7 +71,7 @@ $ conda install pwwang::r-scplotter [7]: https://pwwang.github.io/scplotter/reference/EnrichmentPlot.html [8]: https://pwwang.github.io/plotthis/reference/gsea.html [9]: https://pwwang.github.io/plotthis/reference/VolcanoPlot.html -[10]: https://pwwang.github.io/plotthis/reference/CCCPlot.html +[10]: https://pwwang.github.io/scplotter/reference/CCCPlot.html [11]: https://pwwang.github.io/scplotter/reference/ClonalVolumePlot.html [12]: https://pwwang.github.io/scplotter/reference/ClonalAbundancePlot.html [13]: https://pwwang.github.io/scplotter/reference/ClonalResidencyPlot.html diff --git a/man/pancreas_sub.Rd b/man/pancreas_sub.Rd index 686de52..5302fcd 100644 --- a/man/pancreas_sub.Rd +++ b/man/pancreas_sub.Rd @@ -7,7 +7,7 @@ A \code{Seurat} object. } \source{ -\url{https://scvelo.readthedocs.io/scvelo.datasets.pancreas/} \url{https://github.com/theislab/scvelo_notebooks/raw/master/data/Pancreas/endocrinogenesis_day15.h5ad} +\url{https://scvelo.readthedocs.io/en/stable/scvelo.datasets.pancreas.html} \url{https://github.com/theislab/scvelo_notebooks/raw/master/data/Pancreas/endocrinogenesis_day15.h5ad} } \description{ Mouse pancreatic endocrinogenesis dataset from \href{https://doi.org/10.1242/dev.173849}{Bastidas-Ponce et al. (2019)}. A total of 1000 cells were downsampled to form the \code{pancreas_sub} dataset.