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CHANGELOG.md

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Change log

3.0.2 (2016-03-08)

Added

  • option to pass link to gene view

3.0.1 (2016-03-08)

Fixed

  • minor issues in genes view

3.0.0 (2016-03-08)

Adds

  • Support for new transcript schema in chanjo v3.4.0

Removed

  • Support for default exon focused schema in previous version of chanjo

2.6.1 (2016-03-01)

Fixed

  • generate links with joined gene ids

2.6.0 (2016-02-29)

Added

  • Add overview of transcripts (for list of genes)

Changed

  • Show 404 if gene not found for gene overview

2.5.1 (2016-02-25)

Changed

  • Order completeness levels in plot and update colors
  • Use CDNJS for highcharts to support also HTTPS

2.5.0 (2016-02-25)

Added

  • A new gene overview for all or a subset of samples
  • Include chanjo repo in Vagrant environment

2.4.1 (2016-02-23)

Fixed

  • correctly fetch database uri using CLI

2.4.1 (2016-01-29)

Fixed

  • roll back after OperationalError

2.4.0 (2016-01-13)

Added

  • handle post/get requests for the coverage report (URL limits)
  • new "index" blueprint which displays list of samples and genes

Removed

  • link to the "index" page from the report (security)

Changed

  • use a customized version of the HTML form for the PDF link in the navbar
  • avoid searching for group id if sample ids are submitted in query
  • use "select" element for picking completeness level

Fixed

  • removes the "submit" label from the customizations form
  • look up "show_genes" from correct "args/form" dict

2.3.2 (2016-01-04)

Fixed

  • handle white-space in gene ids

2.3.1 (2015-12-22)

Changed

  • updates how to call diagnostic yield method to explicitly send in exon ids

2.3.0 (2015-11-18)

Adds

  • add ability to change sample/group id in report through query args

2.2.1 (2015-11-18)

Changes

  • improved phrasing of explanations and other translations

2.2.0 (2015-11-16)

Added

  • ability to determine lang by setting query arg in URL
  • add uploaded date to report per sample

Changed

  • rename "gender" as "sex"
  • clarify explanations, rename "diagnostic yield"

Fixed

  • update to Python 3.5 and fix travis test setup
  • stay on "groups" route for PDF report

2.1.0 (2015-11-04)

Added

  • Customization options for report
  • Link to PDF version of report

Changed

  • Updated chanjo requirement

2.0.1 (2015-11-03)

Fixed

  • Include missing template files in dist
  • Include more translations

2.0.0 (2015-11-03)

Changed

  • Adds support for Chanjo 3
  • Layout of report is more condensed
  • Updated APIs across the board

1.0.1 (2015-06-01)

Fixed

  • Fix bug in diagnostic yield method

1.0.0 (2015-06-01)

Fixed

  • Fix issue in diagnostic yield for small gene panels

1.0.0-rc1 (2015-04-15)

Fixed

  • Changes label for gender prediction

0.0.13 (2015-04-13)

Fixed

  • Breaking bug in CLI when not setting gene panel

0.0.12 (2015-04-13)

Added

  • Add explanation of gender prediction in report

Changed

  • Handle extensions of intervals (splice sites) transparently in report
  • Update text in report (eng + swe)

Fixed

  • Avoid error when not setting a gene panel + name in CLI

0.0.11 (2015-04-08)

Changed

  • Enable setting name of gene panel (PANEL_NAME) from command line

0.0.10 (2015-03-22)

Fixed

  • Remove duplicate call to configure_extensions

0.0.9 (2015-03-21)

Changed

  • Keep scoped session chanjo api inside current_app object

0.0.8 (2015-03-21)

Changed

  • Change default log folder to /tmp/logs
  • Rename info log to more specific chanjo-report.info.log

0.0.7 (2015-03-03)

Changed

  • Add a splash of color to HTML/PDF report (CSS only)
  • Change name from HISTORY.md to CHANGELOG.md

0.0.6 (2015-02-25)

Fixed

  • Incorrect template pointers in "package_data"

0.0.5 (2015-02-25)

Fixed

  • Namespace templates for "report" Blueprint under "report"