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NEWS
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neotoma 1.7.7
====================
o This represents the end-of-life update for the package. Updates some function calls and Rd file formatting.
o All new development for Neotoma in R is part of the `neotoma2` R package at https://github.com/NeotomaDB/neotoma2
neotoma 1.7.6
====================
o Updated the API endpoints to correctly point to the new windows API endpoint, in preparation for migration.
o Fixed the help for `get_closest()`
o Changed character encoding for two data tables, `pollen.equiv` and `taxon.list`, made them available in the main package using `data()`.
neotoma 1.7.5
====================
o Introduction of the `sf` package into the package. Using `sf` to buffer and transform coordinates to allow a proper buffer and bounding box to be generated to identify the *n* closest sites to a point of interest.
o Added a warning to `plot_leaflet()` for the default response.
o Updated `param_check()` to include new dataset types within the database.
neotoma 1.7.4
====================
o Bug fix: `get_dataset(gpid=123) was returning an error, fix corrects the error to allow unassigned `x` variables.
o Updated the allowable dataset types for searching to reflect the larger set of dataset types within Neotoma.
neotoma 1.7.3
====================
o Added numeric/integer methods to the `get_site()` and `get_dataset()` functions so that a vector of dataset or siteids can be passed to improve more general workflow methods.
neotoma 1.7.2
====================
o Bugfixes, added the `taxa()` function to easily extract taxa from one or multiple download objects.
neotoma 1.7.1
====================
o Bugfix for `compile_download()`, single sample downloads were failing to compile properly.
neotoma 1.7.0
====================
o Added `plot_leaflet()` to allow interactive exploration of downloaded Neotoma data. Integrates with the Neotoma Explorer.
o Minor bugfix for `get_download` to allow records to be sent to Neotoma and to be filtered.
neotoma 1.6.2
====================
o Bugfix in `get_chroncontrol()`, `read.tilia()` based on experience in extensive testing. Improved the basic `plot` method based on tests against Tilia files in the Neotoma Holding Tank.
o Built more robust interpolation in `read_bacon` so that age models without interpolated dates can still be imported.
o `browse` now opens multiple datastes in the Neotoma Explorer at once.
neotoma 1.6.1
====================
o Bugfix
o New `Stratiplot` method, using the `analogue` package to plot dataset diagrams from `download` and `download_list` objects.
o Bug fixes for `write_agefile`
o New function `read_bacon` to read in and integrate Bacon chronologies into `download` objects.
neotoma 1.6.0
====================
o Support for vector inputs in the `gpid` selection.
o Added a `get_closest` function to find the closest datasets to a sample site.
o Mostly clean-up of reported bugs by users.
o Revised examples for faster check speed.
neotoma 1.5.1
====================
o Fix for datasets with empty submission dates.
o Some minor (non-functional) code cleaning.
o Added extra tests.
neotoma 1.5.0
====================
o More extensive testing to support multiple dataset types. Water chemistry datasets still unsupported.
o Function `read.tilia` added to read Tilia (http://tiliait.com) style XML files.
o Moved to using `xml2`, `httr` and `jsonlite` to support parsing.
neotoma 1.4.0
====================
o The few records without chronologies were causing errors when `get_download` was applied.
o Added plot method.
neotoma 1.3.3
====================
o Critical bug fix: `get_download` now correctly assigns the default chronology to `sample.meta`. All other chronologies (including the default) are stored in the `chronologies` list for the `download`.
o Bugfix for issue #187, empty `dataset_list`s now return a NULL value, rather than breaking the `print` method.
neotoma 1.3.2
====================
o Bugfix for `get_download`, assignment to the `dataset.id` was incorrectly placed causing the columns to be out of place relative to the data.
neotoma 1.3.1
====================
o Bugfix for `write_agefile`
o Added a `browse` method for datasets, that will open a browser window for a specific dataset or download.
o The deprecated `compile_list` function has now been removed. Use `compile_taxa` instead.
neotoma 1.3.0
====================
o Improved functionality of get_chroncontrol to allow it to deal with empty tables and work directly with download and download_list objects.
neotoma 1.2-0
====================
o Added new datasettypes for records, including water chemistry, charcoal, XRD and others.
neotoma 1.1-0
====================
o Publication of Goring, S., Dawson, A., Simpson, G. L., Ram, K., Graham, R. W., Grimm, E. C., & Williams, J. W.. (2015). neotoma: A Programmatic Interface to the Neotoma Paleoecological Database, 1(1), Art. 2. DOI: http://doi.org/10.5334/oq.ab
neotoma 0.1
====================
o continued development of API implementation and working toward a common
standard for data output.
o Continued development of tests for the package.
o Changed function names to singular.