env_python.yml

name: hackathon_multi_omics_2024
channels:
  - conda-forge
  - defaults
dependencies:
  - python=3.10
  - pip
  - pip:
      - git+https://github.com/berombau/spatialdata.git # or change to git+https://github.com/scverse/spatialdata.git@main if you are not interested in reading from s3 buckets
      - git+https://github.com/scverse/spatialdata-plot.git@main
      - hydra-core
      - hydra-colorlog
      - submitit==1.4.5
      - hydra-submitit-launcher==1.2.0
      - python-dotenv
      - ipython
      - ipykernel