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setup.py
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setup.py
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import sys
import os
from setuptools import setup, find_packages
from setuptools import Command
from setuptools.command.test import test as TestCommand
from datetime import datetime
import aggmap
def parse_requirements(requirements):
with open(requirements) as f:
return [l.strip('\n') for l in f if l.strip('\n') and not l.startswith('#')]
with open("README.md", "r") as fh:
LONG_DESCRIPTION = fh.read()
NAME = "aggmap"
VERSION = aggmap.__version__
AUTHOR = "WanXiang Shen"
DESCRIPTION = "Jigsaw-like AggMap: A Robust and Explainable Omics Deep Learning Tool"
URL = "https://github.com/shenwanxiang/bidd-aggmap/tree/master"
REQUIRED_PYTHON_VERSION = (3, 7)
PACKAGES = find_packages(exclude=["paper", "docs"])
INSTALL_DEPENDENCIES = parse_requirements('./requirements.txt')
SETUP_DEPENDENCIES = []
TEST_DEPENDENCIES = ["pytest"]
EXTRA_DEPENDENCIES = {"dev": ["pytest"]}
if sys.version_info < REQUIRED_PYTHON_VERSION:
sys.exit("Python >= 3.7 is required. Your version:\n" + sys.version)
class PyTest(TestCommand):
"""
Use pytest to run tests
"""
user_options = [("pytest-args=", "a", "Arguments to pass into py.test")]
def initialize_options(self):
TestCommand.initialize_options(self)
self.pytest_args = []
def finalize_options(self):
TestCommand.finalize_options(self)
self.test_args = []
self.test_suite = True
def run_tests(self):
import pytest
errno = pytest.main(self.pytest_args)
sys.exit(errno)
setup(
name=NAME,
description=DESCRIPTION,
long_description=LONG_DESCRIPTION,
long_description_content_type="text/markdown",
url=URL,
version=VERSION,
author=AUTHOR,
packages=PACKAGES,
include_package_data=True,
install_requires=INSTALL_DEPENDENCIES,
setup_requires=SETUP_DEPENDENCIES,
tests_require=TEST_DEPENDENCIES,
extras_require=EXTRA_DEPENDENCIES,
cmdclass={"test": PyTest},
)