Cluster 3di fasta file

[schmigle]

Expected Behavior

Feed foldseek easy-cluster a 3Di multi-fasta generated by ProstT5, output a clustering

Current Behavior

Type error

Steps to Reproduce (for bugs)

Feed 3Di fasta to foldseek easy-cluster

Foldseek Output (for bugs)

Input database "mavrich_hatfull_structures/generated_sequences.fasta" has the wrong type (Generic)

Context

I'm guessing this is a simple thing that's covered elsewhere, but I haven't been able to find it. I'm just trying to output MMseqs2-like clusters with 3Di fastas from ProstT5, but easy-cluster asks for PDB files.

Your Environment

Conda environment on an HPC