- #1821 remove numexpr (#1821) (@wkerzendorf)
- #1788 Add cmap option to specify the colormap of abundance plot (#1788) (@yuyizheng1112)
- #1801 Cleaning up docs build (#1801) (@smithis7)
- #1808 Fix importing scipy.sparse.linalg for binder (#1808) (@smithis7)
- #1816 fix push job on update changelog workflow (#1816) (@epassaro)
- #1811 Fixing broken documentation build (#1811) (@smithis7)
- #1744 Basic Spectrum Generation Interactive Documentation (#1744) (@smithis7)
- #1810 Add option to add Observed Spectrum (2) (#1810) (@atharva-2001)
- #1806 Pin
jsonschemato v3 (#1806) (@atharva-2001) - #1761 Revert "Add option to add Observed Spectrum (#1761)" (#1805) (@jamesgillanders)
- #1761 Add option to add Observed Spectrum (#1761) (@atharva-2001)
- #1794 Change virtual spectrum spawn range start value to 1 (#1794) (@atharva-2001)
- #1757 Auto-Generating Tutorials Page (#1757) (@smithis7)
- #1784 Restructure Custom Abundance Widget code (#1784) (@yuyizheng1112)
- #1763 Making Changes to Several Tutorials (#1763) (@smithis7)
- #1790 disable changelog in release pipeline (#1790) (@epassaro)
- #1769 Changed the way
specific_log_levelflag works in the Logging Configuration (#1769) (@DhruvSondhi)
- #1789 add explicit jupyter dependency (#1789) (@epassaro)
- #1787 fix zenodo pipeline env (#1787) (@epassaro)
- #1786 fix for release task (#1786) (@epassaro)
- #1703 Adding Progress Bars (#1703) (@atharva-2001)
- #1775 orchestrating continuous delivery pipeline (#1775) (@epassaro)
- #1778 Fix hoverdata in plasma plots (#1778) (@atharva-2001)
- #1693 Enabling virtual_packet_logging by default in the visualization folder (#1693) (@atharva-2001)
- #1770 Rename cplots to convergence_plots (#1770) (@atharva-2001)
- #1772 Reverse legend in Plasma Convergence Plots (#1772) (@atharva-2001)
- #1768 Renamed
specificlog flag tospecific_log_level(#1768) (@DhruvSondhi) - #1721 Restructure Model Configuration Documentation (#1721) (@smithis7)
- #1753 Adding Convergence Plots to the Documentation (#1753) (@atharva-2001)
- #1738 TARDIS Grid (#1738) (@marxwillia)
- #1755 changing note format (#1755) (@smithis7)
- #1740 Renamed
montecarlo_logger.pytomontecarlo_tracking.py(#1740) (@DhruvSondhi)
- #1697 Interact Button in Documentation (#1697) (@smithis7)
- #1636 Adding Convergence Plots (#1636) (@atharva-2001)
- #1723 Edit docstring in
run_tardis(#1723) (@atharva-2001) - #1743 Fix for Unresponsive Main Page due to Twitter Widget (#1743) (@atharva-2001)
- #1746 Fix docs build [build docs] (#1746) (@smithis7)
- #1730 Renamed log_state to log_level (#1730) (@DhruvSondhi)
- #1736 Fixing Doc Build Warnings (#1736) (@smithis7)
- #1737 Add Jaladh to mailmap (#1737) (@jaladh-singhal)
- #1739 Fixed IPython Displaying the Plasma Stratification (Table) even when the Logger is turned Off (#1739) (@DhruvSondhi)
- #1742 Reduce damping_constant under t_inner for tardis_example.yml (#1742) (@atharva-2001)
- #1665 Demonstrating the
nelementsand thespecies_listfunctionality in the SDEC plot notebook (@atharva-2001) - #1727 Fixing Quickstart Metadata (#1727) (@smithis7)
- #1726 display "latest" in doc version (#1726) (@epassaro)
- #1716 Small fixes to docs (#1716) (@smithis7)
- #1722 Added missing import for IonNumberDensityHeNLTE (#1722) (@DhruvSondhi)
- #1714 Removed Formatting from exisiting log messages (#1714) (@DhruvSondhi)
- #1707 Open in VSCode badge (#1707) (@wkerzendorf)
- #1713 fix package data for conda-forge package (#1713) (@epassaro)
- #1711 Changed the xlim and the ylabel in the quickstart notebook plot (#1711) (@Rodot-)
- #1686 fix pip install (#1686) (@epassaro)
- #1701 Adding Logging Support for Caught Exceptions (#1701) (@DhruvSondhi)
- #1684 Moved Simulation & Montecarlo Logging Frameworks to
tardis/io/loggerfolder (#1684) (@DhruvSondhi) - #1691 Create profiling documentation directory (#1691) (@KevinCawley)
- #1680 Added docstring-coverage badge (#1680) (@epassaro)
- #1696 Adding mu and r to virtual packet logging (#1696) (@smithis7)
- #1695 Enabling spectrum plotting in the frequency domain (#1695) (@smithis7)
- #1688 final changes for release pipeline (#1688) (@epassaro)
- #1683 prepare release pipeline for CalVer (#1683) (@epassaro)
- #1674 APE 17 migration (#1674) (@epassaro)
- #1658 add refdata repo selection in template (#1658) (@epassaro)
- #1682 Opacities script with proper credit (#1682) (@andrewfullard)
- #1580 Revert "Port tardis_opacities script from tardisanalysis (#1580)" (#1677) (@andrewfullard)
- #1660 Small fixes to I/O documentation (#1660) (@smithis7)
- #1678 Enabling Repository on Binder (#1678) (@smithis7)
- #1679 Formatted files with Black (#1679) (@DhruvSondhi)
- #1633 Implementing Logging Configuration for Notebook Logging (#1633) (@DhruvSondhi)
- #1642 Adding Glossary (#1642) (@J-Je0ng)
- #1580 Port tardis_opacities script from tardisanalysis (#1580) (@MarkMageeAstro)
- #1664 Use conda-forge packages instead of pypi (#1664) (@epassaro)
- #1667 Moving Profiling Page (#1667) (@smithis7)
- #1659 Restructure Documentation pt. 2 (#1659) (@smithis7)
- #1656 Editing sponsors and credits pages of documentation (#1656) (@smithis7)
- #1597 Added value error to ensure active virtual packet logging in SDECPlotter (#1597) (@yuyizheng1112)
- #1630 Fix FileExistsError in to_hdf() (#1630) (@yuyizheng1112)
- #1641 Editing Installation Page (#1641) (@musabbihaz)
- #1657 Add SnakeViz profiling example (#1657) (@KevinCawley)
- #1644 add mailmap check workflow (#1644) (@epassaro)
- #1589 Adding Interactive Initialization Documentation (#1589) (@smithis7)
- #1627 Correct misspelling in sdec_plot (#1627) (@yuyizheng1112)
- #1632 Formatting Logging Output for Simulation (#1632) (@DhruvSondhi)
- #1652 Changes to tardis environment (#1652) (@epassaro)
- #1650 Added functionality to detect running environment for simulations (#1650) (@DhruvSondhi)
- #1615 Added flag to disable notebook rendering in Sphinx (#1615) (@epassaro)
- #1651 force orphan gh-pages branch (#1651) (@epassaro)
- #1643 Restructure Documentation (#1643) (@smithis7)
- #1647 Added fix for the packet logging while parallelism is enbaled. The vpacket collections are cached at the start of the loop and data is extracted afterwards (#1647) (@Rodot-)
- #1645 Configured codecov (#1645) (@epassaro)
- #1586 Added GitHub pages instructions (#1586) (@epassaro)
- #1648 Fixed compareWith parameter in release pipeline (#1648) (@epassaro)
- #1609 update refdata procedure docs (#1609) (@epassaro)
- #1635 Run tests before making a new release (#1635) (@epassaro)
- #1617 Fixing docstrings & indentation related warnings for Sphinx (#1617) (@DhruvSondhi)
- #1565 Fix for close line test. (#1565) (@Rodot-)
- #1639 push montecarlo data (#1639) (@epassaro)
- #1595 move zenodo pipeline to GA (#1595) (@epassaro)
- #1623 force pyne nomoab_openmc version (#1623) (@epassaro)
- #1622 Adding GitHub to sponsors page (#1622) (@smithis7)
- #1631 update mailmap and orcid (#1631) (@epassaro)
- #1619 disable repeat on pr comment (#1619) (@epassaro)
- #1555 Replacing the contents of the news section with TARDIS twitter feed (#1555) (@atharva-2001)
- #1610 add token at checkout step (#1610) (@epassaro)
- #1594 Fixing JSON Schema not Rendering Properly in the Documentation (#1594) (@DhruvSondhi)
- #1607 SDEC Visibility Fix (#1607) (@atharva-2001)
- #1603 change bot email (#1603) (@epassaro)
- #1601 fixing doc build (#1601) (@smithis7)
- #1602 add fetch depth param to changelog workflow (#1602) (@epassaro)
- #1588 Added PR review checklist workflow (#1588) (@aribalam)
- #1592 Flexible packet initial radius (#1592) (@andrewfullard)
- #1598 Resolving warnings in ADS notebook (#1598) (@smithis7)
- #1596 Fixing bibliography in documentation build (#1596) (@smithis7)
- #1590 Fixing inconsistencies for
rstformatting in Docs (Second Iteration) (#1590) (@DhruvSondhi)
- #1570 add fetch depth param to Azure template (#1570) (@epassaro)
- #1567 review environment file (#1567) (@epassaro)
- #1584 Making sponsors page of documentation (#1584) (@smithis7)
- #1577 Fixing issues with
Citations&Labelreferences in Docs (@DhruvSondhi) - #1581 changes to badges (@epassaro)
- #1582 Fixing
TeamLink redirection in Code Of Conduct (@DhruvSondhi)
- #1571 Fix numba deprecation (#1571) (@KevinCawley)
- #1578 minor changes to compare refdata pipeline (#1578) (@epassaro)
- #1557 Changed Quickstart Example according to #1477 (#1557) (@aribalam)
- #1575 Fixing virtual_packet_logging instructions for line info widget (#1575) (@DhruvSondhi)
- #1551 Revert "Adding Instructions for enabling virtual_packet_logging (#1551)" (#1574) (@jaladh-singhal)
- #1559 Added support for passing Configuration object in run_tardis (#1559) (@aribalam)
- #1553 Fixing Config Validator rst formatting (#1553) (@DhruvSondhi)
- #1551 Adding Instructions for enabling virtual_packet_logging (#1551) (@DhruvSondhi)
- #1528 Revising "Packet Propagation" page of physics docs (#1528) (@smithis7)
- #1569 [build docs] fixing build problem (#1569) (@smithis7)
- #1566 better handling of pickle5 backport (#1566) (@epassaro)
- #1562 added symlinks for tardis_example.yml (#1562) (@parikshit14)
- #1434 create update refdata pipeline (#1434) (@epassaro)
- #1554 Adding Config Value Validation for Different Parameters via Config File (#1554) (@DhruvSondhi)
- #1549 Numba formal integral (#1549) (@Rodot-)
- #1546 resolves issue #1370 bad YAML Output (#1546) (@atharva-2001)
- #1543 Restructuring r_packet.py (#1543) (@andrewfullard)
- #1539 Add ion contributions to SDEC plotter (#1539) (@MarkMageeAstro)
- #1531 Fix issue 1485 SDEC label bugs (#1531) (@atharva-2001)
- #1493 Added workflow for Documentation preview generation (#1493) (@aribalam)
- #1540 fix version number displayed in docs (#1540) (@epassaro)
- #1538 clean template files (#1538) (@epassaro)
- #1512 Change the default number of interpolate_shells for the formal integral (#1512) (@chvogl)
- #1499 Enable full tests for Formal Integral (#1499) (@aribalam)
- #1530 Typos in git_workflow guide (#1530) (@Molkree)
- #1535 Fix macOS tests (pickle protocol 5) (#1535) (@epassaro)
- #1478 Create a symlink of tardis_example.yml (#1478) (@yuyizheng1112)
- #1527 rtd-theme is incompatible with docutils 0.17 (#1527) (@atharva-2001)
- #1526 enable manual trigger for docs (#1526) (@epassaro)
- #1517 Add catch for missing elements in SDEC plot (#1517) (@MarkMageeAstro)
- #1483 corrected_csvy_model_files (#1483) (@antreev-brar)
- #1479 getting rid of PerformanceWarning: indexing past lexsort depth may impact performance. (#1479) (@atharva-2001)
- #1506 Add ability to plot only top contributing elements to SDEC plot (#1506) (@MarkMageeAstro)
- #1509 Collisional ionization (#1509) (@chvogl)
- #1477 added option for keyword arguments in spectrum plot function (#1477) (@aribalam)
- #1474 Updated Z value of O (#1474) (@ankur-soni97)
- #1498 Feature request: add virtual-packet-logging option to run_tardis() (#1498) (@yuyizheng1112)
- #1502 add missing / in .coveragerc file (#1502) (@yuyizheng1112)
- #1492 Fix docstring mistakes in #1145 (#1492) (@chvogl)
- #1505 Fixing hyperlink (#1505) (@KevinCawley)
- #1481 Added Documentation for Parallel execution with Numba and OpenMP (#1481) (@aribalam)
- #1145 Add photoionization-related rates (#1145) (@chvogl)
- #1470 Incorporating old physics section of the documentation (#1470) (@smithis7)
- #1459 Removed the deprecated --with-vpacket-logging flag (#1459) (@antreev-brar)
- #1462 Renamed widgets subpackage to visualization and restructured modules within it (#1462) (@jaladh-singhal)
- #1464 Fix the array types when interpolate_shells > 0 (@Rodot-)
- #1454 Reorganizing Models (#1454) (@smithis7)
- #1458 Added option to create redirects in docs configuration and redirected gui to visualization (#1458) (@jaladh-singhal)
- #1457 Reproduced SDEC plots in demo notebook (@jaladh-singhal)
- #1446 Fixed italicised Units in sdec_plot (#1446) (@DhruvSondhi)
- #1438 Add documentation for Spectral Element Decomposition Plot (#1438) (@jaladh-singhal)
- #1455 numba_warning (#1455) (@antreev-brar)
- #1442 Fixed distance parameter not producing accurate SDEC plots (#1442) (@jaladh-singhal)
- #1432 fix update changelog workflow (#1432) (@epassaro)
- #1441 Rename SEDec to SDEC in Spectral element DEComposition plot (#1441) (@jaladh-singhal)
- #1430 compare refdata with arbitrary labels (#1430) (@epassaro)
- #1431 Documentation guidelines hotfix (#1431) (@KevinCawley)
- #1424 Rename Kromer Plot to Spectral Element Decomposition (SEDec) Plot (#1424) (@jaladh-singhal)
- #1409 add docstr-coverage workflow (#1409) (@epassaro)
- #1393 update env file (#1393) (@epassaro)
- #1241 Add modified Kromer plot to work with widgets (@jaladh-singhal)
- #1395 Update Matterbridge docs (#1395) (@epassaro)
- #1369 Fix incorrect docstrings (#1369) (@KevinCawley)
- #1383 add preview docs section (#1383) (@epassaro)
- #1392 Fix documentation build (#1392) (@epassaro)
- #1387 Revert "Fixing docs building problem (#1387)" (#1394) (@andrewfullard)
- #1387 Fixing docs building problem (#1387) (@smithis7)
- #1380 Packet logging fixes for visualization (@andrewfullard)
- #1384 Small fixes for existing workflows (#1384) (@epassaro)
- #1382 Fixing Quickstart Problem (@smithis7)
- #1379 Reorganizing files in docs (2/2) (@smithis7)
- #1378 Adding Plasma File in TOC (@smithis7)
- #1371 Reorganizing files in docs (1/2) (@smithis7)
- #1372 Update CI doc section (#1372) (@epassaro)
- #1375 Fixed real packet logging of properties (@andrewfullard)
- #1354 Virtual packet logging fix (@andrewfullard, @wkerzendorf, @Rodot-, @chvogl, @arjunsavel)
- #1368 Fix of Issue #1176 (@KevinCawley)
- #1365 Parallel numba setup (@andrewfullard, @wkerzendorf, @Rodot-, @chvogl, @arjunsavel)
- #1331 Update changelog workflow (@epassaro)
- #1366 Fix duplicate appending of scalars in HDF writer and add an overwrite option (@jaladh-singhal)
- #1364 Fixing issue #1357 (@smithis7)
- #1359 Fix of Issue #680 (#1359) (@KevinCawley)
- #1361 Fixing issue #1177 (#1361) (@smithis7)
- #1358 Fix C formal integral (@andrewfullard, @chvogl)
- #4 Fixed two random indentation irregularities found upon review (@KevinCawley)
- #3 Fixed the last file for #680 (@KevinCawley)
- #2 Fixing Issue #680 (@KevinCawley)
- #1353 fix doc workflow (@epassaro)
- #1349 Adding documentation for research articles that used TARDIS (@KevinCawley)
- #929 This is a year worth of work from many people and hopefully will make TARDIS easier to use and develop on. Co-authored-by: Andrew Fullard andrewgfullard@gmail.com Co-authored-by: Jack O'Brien jobrien585@gmail.com Co-authored-by: Christian Vogl cvogl@mpa-garching.mpg.de Co-authored-by: Andreas Flörs afloers@mpa-garching.mpg.de Co-authored-by: Luke Shingles luke.shingles@gmail.com Co-authored-by: Alice Harpole aliceharpole@gmail.com Co-authored-by: Marc Williamson marxwillia@gmail.com Co-authored-by: Yssa Camacho yssavo.camacho@gmail.com Co-authored-by: Arjun Savel asavel@berkeley.edu Co-authored-by: Stuart Archibald stuart.archibald@googlemail.com Co-authored-by: Siu Kwan Lam michael.lam.sk@gmail.com (@andrewfullard, @wkerzendorf, @Rodot-, @chvogl, @arjunsavel)
- #929 Numba montecarlo (@andrewfullard, @wkerzendorf, @Rodot-, @chvogl, @arjunsavel)
- #1 Updating my Version of Tardis and Fixing Environment (@wkerzendorf, @epassaro, @jaladh-singhal, @morganlee123, @Ak0303, @arjunsavel)
- #1340 Moved staticmethods of line_info module to a dedicated plot_util module (@jaladh-singhal)
- #1333 Rename testing pipeline (#1333) (@epassaro)
- #1300 Remove pip install option from installation docs (#1300) (@jaladh-singhal)
- #1330 Small fix for release pipeline (#1330) (@epassaro)
- #1332 Remove helper scripts (#1332) (@epassaro)
- #1335 Updated gitignore to ignore auto-generated files (#1335) (@jaladh-singhal)
- #1326 Add workflow for autodeploying documentation to github pages via an action (#1326) (@morganlee123)
- #1319 Numba montecarlo tests merged (#1319) (@chvogl)
- #1283 Changed latex strings to raw strings (#1283) (@Ak0303)
- #1310 Apply new template to refdata pipeline (#1310) (@epassaro)
- #1308 Apply new template to release pipeline (#1308) (@epassaro)
- #1318 Numba montecarlo profile1 (@wkerzendorf)
- #1317 Fixed
calculate_distance_lineshowing nu_diff < 0 (#1317) (@Rodot-) - #1309 Re-add C formal integral (#1309) (@chvogl)
- #1313 Create FUNDING.yml (#1313) (@jaladh-singhal)
- #1312 Initial commit (#1312) (@epassaro)
- #1274 Add space to plasma error message (@arjunsavel)
- #1280 Add widgets documentation to tardis docs (@jaladh-singhal)
- #1299 Model configuration output in HDF (#1299) (@andrewfullard)
- #1304 Use tardis-refdata from Azure mirror (CI/CD) (#1304) (@epassaro)
- #1264 Add line info widget to widgets subpackage (#1264) (@jaladh-singhal)
- #1296 Pin pyne to 0.7.0 (#1296) (@andrewfullard)
- #1291 Download atom data from opensupernova mirror (#1291) (@epassaro)
- #1285 Final numba PR (#1285) (@arjunsavel)
- #1254 Fix how virtual_packet properties are saved in hdf (#1254) (@jaladh-singhal)
- #1278 Pin numpy to v1.17 (#1278) (@epassaro)
- #1271 Pin numpy to v1.19.0 (#1271) (@epassaro)
- #1266 Move to Pandas 1.x (#1266) (@epassaro)
- #1244 Explicitly pass number of vpackets to montecarlo_main_loop (#1244) (@arjunsavel)
- #1235 test and fix for issue #1228 (#1235) (@ebjordi)
- #1267 Temporarily fetch refdata from GDrive (#1267) (@epassaro)
- #1265 add GIT_LFS_SMUDGE (#1265) (@kaushik94)
- #1262 Update package versions (#1262) (@epassaro)
- #1263 Clean up status badge display (#1263) (@chvogl)
- #1261 Add governance document (#1261) (@wkerzendorf)
- #1259 emphasised reporting guidelines in code of conduct (#1259) (@harpolea)
- #1255 Pin pyne to v0.5 (#1255) (@epassaro)
- #1213 Re-applied Black formatting to tardis after excluding undesired directories (#1213) (@jaladh-singhal)
- #1210 [MRG] Using Mamba in Pipelines (#1210) (@kaushik94)
- #1237 Add new Contribution guidelines (#1237) (@jaladh-singhal)
- #1238 code of conduct symlink (#1238) (@wkerzendorf)
- #1234 TARDIS Code of Conduct (#1234) (@wkerzendorf)
- #1233 Update of the Governance model (#1233) (@wkerzendorf)
- #1231 Roadmap Documentation Page (#1231) (@marxwillia)
- #1227 Update base.py (#1227) (@arjunsavel)
- #1218 Move and rename coverage file (#1218) (@arjunsavel)
- #1224 Added better mission statement (@wkerzendorf)
- #1190 Change
pytestconfigtorequest.config(#1190) (@epassaro) - #1219 Update index.rst (#1219) (@ycamacho)
- #1136 Debugging relativity on numba_montecarlo (#1136) (@arjunsavel)
- #1203 Minor changes to the environment file and cleanup (#1203) (@epassaro)
- #1209 add sashank27 orcid (#1209) (@sashank27)
- #1207 add git-blame-ignore for code style black Changes (#1207) (@wkerzendorf)
- #1201 Code style black (#1201) (@wkerzendorf)
- #1200 Added jaladh-singhal's orcid (#1200) (@jaladh-singhal)
- #1197 add arjun's name to the ORCID list (#1197) (@arjunsavel)
- #1166 Create a new subpackage for jupyter-widgets and add shell info widgets (#1166) (@jaladh-singhal)
- #1195 Fix badges in README.rst (#1195) (@epassaro)
- #1193 Unpin astropy version (#1193) (@epassaro)
- #1191 Add note to tell users which OS are supported (issue #1125) (#1191) (@ebjordi)
- #1158 Make consistency edits to documentation (#1158) (@arjunsavel)
- #1185 Upgrade pytest version (#1185) (@epassaro)
- #1180 Remove test pipeline (#1180) (@epassaro)
- #1153 update doc page to a notebook (#1153) (@sashank27)
- #1150 Fix the Plasma tests (#1150) (@wkerzendorf)
- #1178 Fix Jack O`Brien and Jordi Eguren author names (#1178) (@epassaro)
- #1171 Changed a print from python 2 to python 3 (#1171) (@arjunsavel)
- #1165 Fix callbacks in run_tardis (@Rodot-)
- #1173 Fix GUI and plasma tests (@epassaro)
- #1168 add checkpoint to PR template checklist (#1168) (@harpolea)
- #1162 Remove duplicated export (#1162) (@epassaro)
- #1159 Fixed crash when integrating in parallel. Crash was previously caused by a double free error. Removing the last call to free caused the spectrum to be computed incorrectly, indicating that the structure of the parallelism was at fault. I removed the firstprivate declaration from the first call to omp parallel as there was no need to make copies of the pointers for each thread (was this even a reasonable thing to do since each thread would have to reallocate the arrays anyway?). There also did not appear to be any need to maintain copies of L or exp_tau for each thread. I then moved the last call to free outside of the parallel section. So now there is no memory allocation or deallocation of L or exp_tau in a parallel block, and exp_tau is freed only once as it should be (#1159) (@Rodot-)
- #1155 add codecov to azure pipelines (#1155) (@wkerzendorf)
- #1157 Update .mailmap (#1157) (@epassaro)
- #1142 Split release pipeline (#1142) (@epassaro)
- #1151 Git ignored VSCode specific files (#1151) (@jaladh-singhal)
- #1149 Made plot size larger in quickstart notebook (#1149) (@jaladh-singhal)
- #1147 allow downloading of example file in quickstart (#1147) (@sashank27)
- #1105 Add skip condition if QT_API is no set (issue #1101) (@ebjordi)
- #1143 Set manual trigger on file (compare refdata) (@epassaro)
- #1144 add option to execute quickstart in build (#1144) (@sashank27)
- #1133 Solve pending issues of the release pipeline (#1133) (@epassaro)
- #1141 fix warnings in quickstart (#1141) (@sashank27)
- #1137 Increasing glob-like omission of coverage files (#1137) (@arjunsavel)
- #1139 Added more file types to git ignore (#1139) (@jaladh-singhal)
- #1134 Update mailmap (@epassaro)
- #1135 Running tests on MacOS-10.14 (@epassaro)
- #1068 Migrate gui to PyQt5 (issue #988) (#1068) (@ebjordi)
- #1085 Solves issue #680 for tardis.util.base (i.e. numpydocs format for doc strings.) (@Phantsure)
- #1055 renamed capmanager class functions (#1055) (@not4win)
- #1048 Re-activate TARDIS tests (#1048) (@epassaro)
- #1046 Updated zenodo.json (#1046) (@epassaro)
- #1045 Fix file paths at
diffstep in release pipeline (#1045) (@epassaro) - #1040 Re-activate release job (#1040) (@epassaro)
- #1039 Update .mailmap (#1039) (@epassaro)
- #1031 Create Zenodo JSON file (#1031) (@epassaro)
- #1036 Update zenodo.json (#1036) (@epassaro)
- #1035 Update .mailmap (#1035) (@epassaro)
- #1034 Update .mailmap (#1034) (@epassaro)
- #1032 Add Mark Magee to .mailmap (#1032) (@epassaro)
- #1025 Add
compilersto environment YAML file (#1025) (@epassaro) - #1026 Minor changes (#1026) (@epassaro)
- #1027 Added Mark Magee (#1027) (@MarkMageeAstro)
- #1024 Add epassaro orcid (#1024) (@epassaro)
- #1022 added Alice's orcid (#1022) (@harpolea)
- #1021 Set cron job, disable CI and PR (#1021) (@epassaro)
- #1015 Set up release TARDIS version with Azure Pipelines (#1015) (@epassaro)
- #1020 Update .mailmap (#1020) (@livnehra)
- #1018 Updated .mailmap (#1018) (@epassaro)
- #1010 Pipeline for comparing reference data (#1010) (@epassaro)
- #1016 Removed GH Action for release versions (#1016) (@epassaro)
- #1013 Fixed typo (#1013) (@epassaro)
- #1006 Trying to get the right version number for automatic release (#1006) (@epassaro)
- #1008 Improvements for the update_reference section [docs] (#1008) (@epassaro)
- #1011 Gui fix (#1011) (@marxwillia)
- #1009 Fix for packet source unit test (#1009) (@epassaro)
- #1007 Fix for vboundary tests (#1007) (@epassaro)
- #995 Checking failing tests on Azure (#995) (@kaushik94)
- #1005 Add YML file for release version (#1005) (@epassaro)
- #1004 Fixed csvy abundance indexing bug (#1004) (@marxwillia)
- #1003 Custom source packets (#1003) (@marxwillia)
- #994 Large cleanup operation (#994) (@wkerzendorf)
- #992 Changes made to update_refdata documentation (#992) (@kowal180)
- #967 log additional properties in hdf witeout when --with-vpacket-logging is present (#967) (@kaushik94)
- #969 Fixes numpydoc for util (#969) (@kowal180)
- #985 Fix typo (#985) (@jreichenbach-msu)
- #983 Fix git clone rendering in installation (#983) (@jreichenbach-msu)
- #982 Pinned
numpyto v1.15 (#982) (@epassaro) - #978 Add further fix to quickstart link (#978) (@jreichenbach-msu)
- #975 Add links to Quickstart (#975) (@jreichenbach-msu)
- #971 Fix formal integral spikes bug (see #970) (#971) (@chvogl)
- #968 Fixed GUI #950 tardis/gui/widgets.py (@jamesgillanders)
- #965 Isotope time0 (#965) (@marxwillia)
- #966 fix AtomData repr. (#966) (@wkerzendorf)
- #964 Raise error if requested atoms are not in the atomic data (#964) (@chvogl)
- #959 Csvy model config dict (#959) (@marxwillia)
- #949 Add issue template (#949) (@Youssef15015)
- #960 Save integrated spectrum to hdf if requested (#960) (@chvogl)
- #957 add blondin converter (#957) (@wkerzendorf)
- #956 Dilution factor fix (#956) (@marxwillia)
- #953 add code comparison (#953) (@wkerzendorf)
- #952 Base schema fix (#952) (@marxwillia)
- #951 Documentation restructure (@wkerzendorf, @marxwillia)
- #26 Added Model Doc Page (#26) (@marxwillia)
- #943 Update General CI Documentation (#943) (@Youssef15015)
- #936 csvy_model (@Youssef15015, @marxwillia)
- #940 parent 8d9001822f586857f2f8353a56185310832886dc (@Youssef15015)
- #942 Update self-hossted agent documentaiton (#942) (@Youssef15015)
- #946 Update build documentation script (@Youssef15015)
- #945 Revert "Remove PR Trigger" (@wkerzendorf)
- #944 Remove PR Trigger (@Youssef15015)
- #939 Deploying documentation using Azure (@Youssef15015)
- #940 Correct index script spelling (#940) (@Youssef15015)
- #928 Added csvy parser (#928) (@marxwillia)
- #933 Radiative recombination (#933) (@chvogl)
- #934 Relocated the azure_pipelines.yml into a new directory called pipelines, and renamed it as pipeline_A (#934) (@Youssef15015)
- #930 Fix for conda-forge package (#930) (@epassaro)
- #918 Density docs (#918) (@marxwillia)
- #926 Adding a TARDIS data repo (#926) (@wkerzendorf)
- #924 Migrate beta_sobolev calculation from cython to numba (#924) (@chvogl)
- #925 Docs/fix changelog (@wkerzendorf)
- #923 Fix nlte normalization (@livnehra)
- #920 Revert "Fix nlte normalization (#920)" (#922) (@wkerzendorf)
- #920 Fix nlte normalization (#920) (@wkerzendorf)
- #921 add changes builder to travis process (#921) (@wkerzendorf)
- #919 Add possibility to bias vpacket emission based on optical depth (#919) (@chvogl)
- #914 make python3 compatible (#914) (@wkerzendorf)
- #902 general overhaul of the docs for 3.0 (#902) (@wkerzendorf)
- #916 make python3 compatible (#916) (@wkerzendorf)
- #915 Parsing STELLA files for TARDIS (#915) (@sarafina325)
- #911 Use Russian roulette to kill v-packets with negligible weight (#911) (@chvogl)
- #697 Relativity (#697) (@chvogl)
- #901 .nojekyll added to docs (#901) (@debajyotidasgupta)
- #897 add pytest azurepipelines (#897) (@wkerzendorf)
- #896 Adding general build artefacts (#896) (@wkerzendorf)
- #894 Azure pipeline for TARDIS (#894) (@wkerzendorf)
- #893 add doctr to TARDIS (#893) (@wkerzendorf)
- #892 adding azure-pipelines (#892) (@wkerzendorf)
- #891 New template setup from astropy (#891) (@wkerzendorf)
- #888 Update installation.rst (#888) (@nileshpatra)
- #886 Pandas ix fix (#886) (@wkerzendorf)
- #879 Python3 version of TARDIS (#879) (@wkerzendorf)
- #881 Adds description of gcc problem to documentation (#881) (@ycamacho)
- #859 Use interpolated values to do formal integral with more shells (#859) (@chvogl)
- #873 Some small fixes related to the documentation and the building process (Fix #842) (#873) (@unoebauer)
- #868 Add Travis Stages: Activate Integration tests (#868) (@unoebauer)
- #866 Add Travis Caching and separate scripts for CI (#866) (@wkerzendorf)
- #864 Unify unittest hdfs (#864) (@unoebauer)
- #865 Adding CodeCov integration (#865) (@wkerzendorf)
- #860 add call_back to run_tardis (#860) (@wkerzendorf)
- #863 Thomson cross section: Continuation of PR #688 (#863) (@unoebauer)
- #850 Add full test for formal integral method (#850) (@unoebauer)
- #861 Describe refdata update and workflow refactor (#861) (@wkerzendorf)
- #848 Add capability to store information about the plasma state during iterations (#848) (@unoebauer)
- #857 Refactor logging (#857) (@wkerzendorf)
- #856 Extend formal integral to line_interaction_type macroatom (#856) (@chvogl)
- #855 Make the conda-forge channel the only channel (#855) (@wkerzendorf)
- #853 Fix formal integral (#853) (@chvogl)
- #849 Missing refdata (#849) (@wkerzendorf)
- #851 add atomic data description (#851) (@wkerzendorf)
- #845 Update Documentation: new location of tardis_example (#845) (@unoebauer)
- #843 Fix issue with custom_composition reader (#843) (@unoebauer)
- #844 Remove bbsampling from schema file (#844) (@pfreddy)
- #837 Add json sphinx (#837) (@wkerzendorf)
- #841 Fixed indentation and position of delta_treatment in plasma/standard_plasmas.py (#841) (@Heringer-Epson)
- #838 fix cython version to specific commit (#838) (@wkerzendorf)
- #821 Simplify convergence strategies (#821) (@unoebauer)
- #833 restructure landing page to use notebooks (#833) (@wkerzendorf)
- #832 Fixes #830 (#832) (@unoebauer)
- #829 build bleeding edge cython (#829) (@wkerzendorf)
- #828 trying to get travis to build (#828) (@wkerzendorf)
- #827 Update travis link to miniconda (#827) (@unoebauer)
- #826 Remove docu refs to tardis_example.tar.gz (#826) (@unoebauer)
- #820 update of mailmap (#820) (@wkerzendorf)
- #819 Reintroduce and update changelog (#819) (@unoebauer)
- #815 Update and Fix Documentation (#815) (@unoebauer)
- #816 Remove old and broken badges (@unoebauer)
- #814 Fix numpydoc problem (@wkerzendorf, @unoebauer)
- #812 Update of documentation (@unoebauer)
- #809 fix dependencies for tardis conda env (#809) (@wkerzendorf)
- #761 Add caching for integrated spectrum: Fix #760 (@unoebauer)
- #715 Merge 'generate_reference_path' and 'reference_path' in integration tests (bug #672) (@rinklejain)
- #801 Decay of isotopes branch (@wkerzendorf, @vg3095, @pfreddy)
- #806 Fix reference dictionary problem (@pfreddy)
- #803 include yml files in MANIFEST (@wkerzendorf)
- #802 Fix for PR #801 (@vg3095)
- #799 tardis/plasma/standard_plasmas.py: old database files warning (@laudb)
- #797 Minor Updates: Fixes for #521 and #699 (@unoebauer)
- #796 Prevent pandas SettingWithCopyWarning by copying DataFrames when slicing (@lukeshingles)
- #795 Force deactivate LaTeX in GUI - Fix #441 (@unoebauer)
- #793 Add pyside to requirements (needed for GUI) (@wkerzendorf, @unoebauer)
- #794 add new readthedocs.yml (@wkerzendorf)
- #792 Fix compatibility with networkx 2.0 (@lukeshingles)
- #791 Propagate changes to the line index into the GUI code (@yeganer)
- #786 The final carsus merge (@yeganer, @ftsamis, @mishinma)
- #782 Plasma write_to_tex/dot unit tests (@vg3095)
- #781 Omit coverage of test related files (@vg3095)
- #785 [DOC] Update Running tests doc (@vg3095)
- #774 Replace Comparison values in Plasma Unit Tests with reference HDF file (@vg3095)
- #780 LevelBoltzmannFactorNLTE.from_config is now a staticmethod (@yeganer)
- #778 Fix NLTE (@yeganer)
- #776 Fix compatibility bug in radiative_properties (@yeganer)
- #779 Save coverage report when tests use tardis-refdata (@vg3095)
- #775 Transition from atomic-dataset config option to tardis-refdata (@vg3095)
- #772 [TEP007] CMFGEN density parser (@vg3095)
- #771 [TEP007] Add cmfgen2tardis script (@vg3095)
- #757 [TEP007] Decay and merge isotopic abundance dataframe (@vg3095)
- #769 [TEP014] [DOC] Updated to_hdf notebook (@vg3095)
- #759 Formal Integral: including electron scattering (@unoebauer, @yeganer)
- #768 [TEP014] Simulation HDF and deprecated to_hdf cleanup. (@vg3095)
- #773 Update Documentation (@unoebauer)
- #767 [TEP007] Docs for isotope config (@vg3095)
- #764 [TEP007] Isotope stratified file support (@vg3095)
- #752 [TEP014] PlasmaWriterMixin (@vg3095)
- #748 [TEP014] Update Runner and Spectrum classes to use HDFWriter + Unit Tests (@vg3095)
- #762 [TEP007] Isotope uniform config option (@vg3095)
- #765 Attempt to fix up the GUI (@ssim, @unoebauer)
- #13 Introduce proper masking for GUI (addition to PR #765) (@unoebauer)
- #1 Streamline the OMP implementation (@yeganer)
- #756 [TEP007] [WIP] Isotope Abundances class (@vg3095, @wkerzendorf)
- #758 Add new version to tardis_env27 and add pyne (@wkerzendorf)
- #753 [TEP014][DOC] HDFWriter Documentation (@vg3095)
- #740 [GSoC] Formal integral Project (@yeganer)
- #747 [TEP014] Update Model and Density classes to use HDFWriter + Unit Tests (@vg3095)
- #750 [TEP005][QOL] Add MontecarloRunner.spectrum_integrated (@yeganer)
- #749 [TEP014] Change name of HDFWriter to HDFWriterMixin (@vg3095)
- #745 [TEP005][DOC] Documentation (@yeganer)
- #751 [QOL] Add default axis to TARDISSpectrum.plot (@yeganer)
- #743 Fix bug in plasma (@yeganer)
- #744 [TEP014] Added HDFWriter class + Unit Tests (@vg3095)
- #746 [TEP005][CONFIG] Prevent incompatible configurations (@yeganer)
- #741 Add unit tests for the formal integral (@yeganer)
- #742 Fix clash in RTD dependencies (@yeganer)
- #735 Move common ctest fixtures into conftest.py (@yeganer)
- #729 Refactor spectrum (@yeganer)
- #730 Fix test_plasma_simple not skipping properly (@yeganer)
- #712 Colorize Logger (@vg3095)
- #718 Unit test for untested method of montecarlo simulation code (@suyashgupta20)
- #724 Rebase PR #678 (@yeganer)
- #709 Add note about broken GUI to docu (@unoebauer)
- #708 Add new installation instructions (@wkerzendorf)
- #704 Fix ignoring model tests (@ftsamis)
- #700 Add contributing guidelines (@wkerzendorf)
- #686 converted spectrum_frequency (@chinmay0301)
- #696 Add missing diagnostics property to runner's to_hdf list (@unoebauer)
- #694 Significantly reduce peak memory usage when vpacket logging is enabled (@ftsamis)
- #682 Import montecarlo.base in the init module of the package. (@ftsamis)
- #670 Integrate continuum interactions into cmontecarlo (@chvogl)
- #652 [TEP006] Aggregate TARDIS restructure and configuration system cleanup (@ftsamis)
- #677 Update link to tardis_example.yml in documentation - Fix #676 (@unoebauer)
- #674 Change matplotlib backend - fix test_integration remote plotting issue (@unoebauer)
- #664 Kd final test (@wkerzendorf, @yeganer)
- #21 fKd final test (@yeganer)
- #668 change to tardis atom data on git lfs (@wkerzendorf)
- #666 Remove News from main TARDIS github page (@unoebauer)
- #667 Update SOCIS and GSOC students credits (@unoebauer)
- #665 Add to_hdf compression (@yeganer)
- #663 Develop (@tardis-sn)
- #657 Require pyyaml 3.12 (@ftsamis)
- #659 Update installation docs (@ftsamis)
- #653 Facility to provide per-setup atom data as well as save report locally. (@karandesai-96)
- #641 Fix detailed radiative rates (@yeganer)
- #642 Use pytest-html==1.10.0, modify DokuReport class accordingly. (@karandesai-96)
- #630 [IntegrationTests] Overview page on Dokuwiki.
Running the integration tests will update an overview page on DokuWiki. (@karandesai-96)
- #620 Runner script to automate execution of integration tests. (@karandesai-96)
- #628 Remove exponent property from yaml files with exponential density (@ftsamis)
- #626 Revert "Add exponent as a property for exponential density" (@ftsamis)
- #542 Updates to He NLTE treatment. (@aoifeboyle)
- #612 Add facility to generate and accept HDF files as reference data for Integration Tests. (@karandesai-96)
- #614 Omit the integration_tests when running coveralls (@yeganer)
- #619 Fixed incorrect name in error message (@Tobychev)
- #618 to_hdf: If only the last run is stored, do not add a counter in the name (@ftsamis)
- #617 Add a to_hdf method on TARDISSpectrum (@ftsamis)
- #600 Parametrize the Slow Test class with two setups. (@karandesai-96)
- #613 Fix bug in montecarlo.pyx (@yeganer)
- #595 Line absorption rate estimator (@Tobychev)
- #606 Merge to_hdf (@ftsamis, @wkerzendorf)
- #585 [TEP002] Add a to_hdf method to the MontecarloRunner (#585) (@ftsamis)
- #597 Use abundances, densities filepaths relative to w7 config file. (@karandesai-96)
- #569 Added a conda environment for tardis (@wkerzendorf)
- #565 Change the way AtomData quantities are initialized (@yeganer)
- #599 Update the tardis_example tar file provided in the documentation. (@ftsamis)
- #598 Fix convergence handling in run_legacy_simulation - fix issue #593 (@unoebauer)
- #590 Link images of comparison plots in DokuReport using hookwrapper. (@karandesai-96)
- #591 Fix path of CSS and JS files used in html report. (@karandesai-96)
- #594 Provide tardis.yaml_load shortcut (@yeganer)
- #592 Fix virt energy (@yeganer)
- #583 Subclass pytest-html's HTMLReport to DokuReport class for report generation and upload (@karandesai-96)
- #587 Move the three spectra attributes from Radial1DModel to MontecarloRunner (@ftsamis)
- #578 Shift slow test related pytest hooks in lower level conftest.py (#578) (Karan Desai)
- #581 Update several files to match package_template (@yeganer)
- #576 [config-system] Validator rewrite: Use jsonschema (@ftsamis)
- #575 Replace misused calls to yaml.load with a helper function. (@ftsamis)
- #570 Enable generation of html report of integration tests, and upload to dokuwiki. (@karandesai-96)
- #574 tardis/base.py: Remove duplicate code from run_tardis (@ftsamis)
- #573 io/util.py (YAMLLoader): Use OrderedDict to store loaded YAML (@ftsamis)
- #572 Change the way YAMLLoader resolves some properties (@ftsamis)
- #532 Documentation overhaul (@unoebauer, @chvogl)
- #571 data/tardis_config_definition.yml: Set the exponent property as mandatory when density is exponential. (#571) (@ftsamis)
- #566 Initial laydown of comparison plots for TestW7. (#566) (Karan Desai)
- #567 Accept keyword arguments for Configuration.from_yaml (@yeganer)
- #561 TestW7: Assertions for spectrum quantities, fixture for handling baseline data. (@karandesai-96)
- #515 [config-system] Add a custom YAML Loader to parse astropy quantities (@ftsamis)
- #555 Use pytest's monkeypatch.chdir to change the working directory in the config_reader tests (@ftsamis, @lukeshingles)
- #558 Integration Test class for Stratified W7 setup. (@karandesai-96)
- #557 Enable skipping slow tests. (@karandesai-96)
- #544 Continue cmontecarlo tests refactor. Extend #530. (@karandesai-96)
- #543 Fix issue #535: Treat rel. paths inside config relative to the config file (@lukeshingles, @ftsamis)
- #1 Write tests for the issue #535 fix. (@ftsamis)
- #551 Add SOCIS 2016 advertisement (@unoebauer)
- #547 Fix Issue #548 (@karandesai-96)
- #545 added mailmap to compile the commits for each person (#545) (@wkerzendorf)
- #539 Adding OSX to our travis build (#539) (@wkerzendorf)
- #541 Move progress bar update after calculation (#541) (@yeganer)
- #540 Mirroring C enums in Python for CMontecarlo tests. (@karandesai-96)
- #538 Upgrading to the new Readthedocs infrastructure (#538) (@wkerzendorf)
- #530 Refactor cmontecarlo testing framework (@karandesai-96)
- #537 Ignore invalid OpenMP nthreads values (#537) (@yeganer)
- #533 Remove rpacket.recently_crossed_boundary flag (@yeganer)
- #514 Performance (@yeganer)
- #531 Organize headers in C-Extension (@yeganer)
- #526 Docs: Include conda-requirements in installation.rst (@karandesai-96)
- #519 Documentation:Installation modify command (@yeganer)
- #510 Updates requirements to solve libgfortran error. Fixes #509 (@karandesai-96)
- #495 Fix energy conservation (@unoebauer)
- #486 Bugfix radiative rates type detailed (@chvogl, @unoebauer)
- #488 Fix indentation in c extension (@yeganer)
- #494 Fix #493 (@yeganer)
- #1 Add simple test for j_blue_estimator (@unoebauer)
- #491 Include IDE specific auto-generated files in .gitignore. Fixes #490 (@karandesai-96)
- #485 Montecarlo progress (@yeganer)
- #457 Fix Issue #454 (@yeganer)
- #484 Minor improvement of vpacket logging scheme (@unoebauer)
- #479 added units to test_simulation.py (@mishinma)
- #469 Changed the Link for AstroPy's dev workflow (@souravsingh)
- #481 Introcuding safe_malloc and safe_realloc macros: fixes #480 (@unoebauer)
- #475 Reorganize import statements in atomic.py (@Pratik151)
- #471 Quickfix to solve Issue #455 and #464 (@yeganer)
- #472 fixed build of documentation on readthedocs (@wkerzendorf)
- #461 Bugfix test cmontecarlo (@yeganer)
- #452 Build fix and nthreads fix - fixes #356 (@unoebauer)
- #450 Checking for zero-volume cells: Fixes issue #79 (@unoebauer)
- #449 added test to verify virtual spectrum (@unoebauer)
- #446 calculate virtual spectrum independently of vpacket loggin - fixes #445 (@unoebauer)
- #440 started addressing issue #436 (@unoebauer)
- #426 Simulation - restructure (@wkerzendorf)
- #434 updated the .travis.yml file to do a rehash before executing conda (@wkerzendorf)
- #433 Optional vpacket logging WIP (@tardis-sn)
- #425 Updated nlte.rst (@souravsingh)
- #424 added a new requirement for astropy (@wkerzendorf)
- #1 Update nlte.rst (@souravsingh)
- #375 made sure that atomic does not reinsert the index into the dataframe (@wkerzendorf)
- #420 Memory issue (@wkerzendorf)
- #416 added new version requirements for pandas and astropy (@wkerzendorf)
- #414 Improvements to He approximation. (@aoifeboyle)
- #413 WIP Docstrings (@wkerzendorf)
- #412 Fix for zeta issues. (@wkerzendorf)
- #3 Plasma/ab zeta fix (@wkerzendorf)
- #410 WIP: Cleaning up plasma (@wkerzendorf)
- #399 Plasma optimization (@wkerzendorf, @mreineck)
- #2 fix for chi_0 problem (@wkerzendorf)
- #19 Plasma optimisation fix. (@aoifeboyle)
- #404 Montecarlo/new packet source (@wkerzendorf)
- #407 Organising of plasma base files. (@aoifeboyle)
- #405 Pandas macroatom issue fix (@wkerzendorf)
- #406 Numerical He NLTE. (@aoifeboyle)
- #401 Alternative fix for issue #393 (@mreineck)
- #398 More cleanups (@mreineck)
- #400 Change to NLTE properties (@aoifeboyle)
- #397 Montecarlo/memoryview (@wkerzendorf)
- #396 added virt_packet properties to to_hdf5 list (Kromer plot) (@unoebauer)
- #391 More work on cmontecarlo.c and the unit tests (@mreineck)
- #364 added tardis stats (@wkerzendorf)
- #392 Consistency between old virtual packet arrays and new ones introduced in PR 384 (@unoebauer)
- #389 changes to address issue #388 (@mreineck)
- #386 improve inlining specifications and fix a few problems (@mreineck)
- #384 Minor changes in Monte Carlo and model part for Kromer plots (@unoebauer)
- #374 WIP: Helium approx. (@wkerzendorf)
- #382 Improvements to plasma graph (@aoifeboyle)
- #381 Fix to plasma issue with GUI. (@aoifeboyle)
- #379 Fix of to_hdf5. (@aoifeboyle)
- #377 Plasma static methods (@aoifeboyle)
- #373 Removing test_plasma_nlte.py. (@aoifeboyle)
- #372 Correcting some old plasma tests. (@aoifeboyle)
- #304 Plasma restructure (@wkerzendorf)
- #370 Removed some tests temporarily. (@aoifeboyle)
- #369 Removed import plasma_array (@aoifeboyle)
- #368 Fixing plasma merge (@aoifeboyle)
- #367 preparing for the new container archictecture used by travis (@wkerzendorf)
- #365 LTE Plasma Test (@aoifeboyle)
- #361 Added formulae to graph. (@aoifeboyle)
- #360 Rebasedvirtrunner (@orbitfold, @wkerzendorf)
- #362 Adjusted stimulated emission factor for NLTE. (@aoifeboyle)
- #355 Add with-openmp to develop (@orbitfold)
- #354 added print statement for openmp (@wkerzendorf)
- #350 Tidying/Testing/Documenting Plasma (@aoifeboyle)
- #352 Attempt at solution. (@aoifeboyle)
- #330 [GSoC 2015 WIP] Testing other montecarlo functions (@kaushik94)
- #347 NLTE (@aoifeboyle)
- #325 Bound-free interactions (@chvogl)
- #344 Plasma/multiple outputs (@aoifeboyle)
- #346 linked the plasma documentation again (@wkerzendorf)
- #338 OpenMP WIP (@orbitfold)
- #343 Plasma/multi output (@wkerzendorf)
- #17 Fixes. (@aoifeboyle)
- #324 Gui package (WIP) (@gautam1168)
- #327 [GSoC 2015 MRG] Testing getters setters (@kaushik94)
- #322 Updating the gui documentation. (@gautam1168)
- #296 Gui with menubars(WIP) (@gautam1168)
- #320 virtual packets frequency cut (@unoebauer)
- #314 Installation FAQ (@wkerzendorf)
- #310 A more detailed description of the montecarlo process (@wkerzendorf)
- #301 [GSoC 2015 MRG] Restructuring Montecarlo (@kaushik94)
- #234 Removing usage of yield in test_utils.py (@kaushik94)
- #299 Test of model_reader.py (@wkerzendorf, @ssim)
- #288 -fixed discrepancy concerning hold_iterations (@unoebauer)
- #286 Proposal for a new to HD5 function. (@mklauser)
- #283 fixed the reader for the older Paper1 format yaml files (@wkerzendorf)
- #269 Miscellaneous README changes (@iKevinY)
- #251 gui.py and running.rst edited for PyQt4 and PySide (@gautam1168)
- #250 Docs/pip reqs (@wkerzendorf)
- #244 added coverage back (@wkerzendorf)
- #240 rename of pip-requirements to conda-requirements (@wkerzendorf)
- #225 Test added in test_atomic.py (@vaibhav4595)
- #223 Update git_workflow.rst (@ujjwalwahi)
- #219 fixing run_tardis (@wkerzendorf)
- #218 Docs/anaconda install (@wkerzendorf)
- #217 Docs/fixing pip requirements (@wkerzendorf)
- #216 some fixes to the gui so it works with pyside (@wkerzendorf)
- #214 Preparing the docs for V1 (@wkerzendorf)
- #210 a restructure of the C-file file structure (@wkerzendorf, @mklauser)
- #7 include .c in montecarlo/src/ for the randomkit files (@mklauser)
- #209 Testing/pandas version info (@wkerzendorf)
- #205 As simpler
run_tardis(@wkerzendorf) - #206 Minor but critical fix to binary search (reverse) (@ssim)
- #199 Gnuify cmontecarlo.c and cmontecarlo.h files (@orbitfold)
- #203 Docs/reporting bugs (@wkerzendorf)
- #201 A critical warning was added to the model indicating that no packet has left the simulation through the outer boundary. (@mklauser)
- #200 added a new location for the atomic data. (@wkerzendorf)
- #196 New binary search added (@mklauser)
- #169 fix for #168 (@mklauser)
- #194 Setup/fix requirements (@wkerzendorf)
- #188 A macro to automagically fix inline issues (@orbitfold)
- #190 General/fixing unit problems (@wkerzendorf)
- #183 Added colon (@sofiatti)
- #179 making sure that if last_no_of_packets is not specified that it is set t... (@wkerzendorf)
- #178 Atomic/fix reprepare (@wkerzendorf)
- #177 added from_yaml and from_config_dict to ConfigurationNameSpace (@wkerzendorf)
- #175 Fix a few problems in cmontecarlo.c (@orbitfold, @wkerzendorf)
- #174 fixes added for clang compile on mac (@wkerzendorf)
- #171 Fix issues when using clang compiler (issue #170) (@orbitfold)
- #167 fix for #165 (@mklauser, @wkerzendorf)
- #3 testing the new t_inner fix (@wkerzendorf)
- #164 Config/toggle validation (@wkerzendorf)
- #151 WIP Montecarlo C Rewrite (@orbitfold)
- #160 how to get constant density? broken? (@wkerzendorf)
- #158 updated astropy_helpers version (@wkerzendorf)
- #157 added yaml to pip-requirements and linked the doc pip-requirements to this (@wkerzendorf)
- #154 renamed Config to ConfigurationValidator (@wkerzendorf)
- #153 General mixup of 0.9.2b1 (@wkerzendorf)
- #152 importing problems with new C functions? (@wkerzendorf)
- #149 Edits to docs (@ssim)
- #150 Montecarlo flowchart (@orbitfold)
- #148 fixed config_validator log_lsun check (@wkerzendorf)
- #142 WIP Porting utility functions to C (issue #131) (@orbitfold)
- #137 TRAVIS passes. (@wkerzendorf)
- #143 Updating configuration name space (@wkerzendorf)
- #136 Updating the config reader to work with the validator (@wkerzendorf, @mklauser)
- #145 Adding full spectrum generation test to TRAVIS (@wkerzendorf)
- #144 Setup/switch to astropy helpers (@wkerzendorf)
- #6 Pr136 (@mklauser)
- #5 Pr136 (@mklauser)
- #4 Pr136 (@mklauser)
- #3 Pr136 (@mklauser)
- #2 bug fix for the container handling. ToDo Remove remove general except in... (@mklauser)
- #135 Adding documentation for d_inner and d_outer calculation (@wkerzendorf)
- #132 i try to rebase the dp to the master (@mklauser)
- #134 Test high temperature - outside of interpolation range of zeta factor (@wkerzendorf)
- #129 Re-implement binary_search in C (@orbitfold)
- #127 Docs edit only ("accessing physical quantities") (@ssim)
- #116 Adding documentation for Workflow (@wkerzendorf, @ssim)
- #112 NLTE fixes - discussion needed before merge - relates to #109 (@ssim, @wkerzendorf)
- #11 fixing up the NLTE tests (@wkerzendorf)
- #10 Plasma/fix nlte tests (@wkerzendorf)
- #122 proposed restructing of binary search/line search (@ssim, @wkerzendorf, @mklauser)
- #9 Issue 123two (@mklauser)
- #124 updated current_public_table.rst (@wkerzendorf)
- #7 Fix line search (@wkerzendorf)
- #6 updated documentation to numpydoc standard (@wkerzendorf)
- #121 warning added for density file readin outside tabulated range (@ssim)
- #119 Fix to deal with possible problem in end of line list (@ssim)
- #118 Fix for the issue #84 Pull request for fixes / documentation edits related to the profiles (@ssim, @mklauser)
- #91 Documentation update to download atomic databases (@wkerzendorf)
- #110 #106 suggestion for private variable names (@mklauser, @ssim)
- #111 minor fixed / logger statements (@ssim)
- #97 Fix for issue #81: Add warning if w > 1. (@thegyro)
- #92 Adding a simple test to run a full calculation (@wkerzendorf)
- #101 Fix for Issue #88: Moved test functions for tardis.util from test_config_reader (@thegyro)
- #94 Fix coveralls (@wkerzendorf)
- #87 Added --profile and --profiler_log_file command line arguments to enable... (@orbitfold)
- #74 fixed manifest to incluse ez_setup.py and setuptools_bootstrap.py. fixes... (@wkerzendorf)
- #78 cosmetic fixes (@ssim)
- #77 Docs edit (@ssim, @wkerzendorf)
- #1 Docs fix (@wkerzendorf, @ssim)
- #76 stuff with abundance profile readin (@ssim)
- #75 work on gui fixing (@ssim)
- #72 documentation update for release (@wkerzendorf)
- #71 New configuration style (@wkerzendorf)
- #70 added simple coveralls.io in there (@wkerzendorf)
- #69 Atomic/atomic symbols (@wkerzendorf)
- #67 Config/ascii file reader (@wkerzendorf)
- #68 Tests/fixing2 (@wkerzendorf)
- #61 gui fix (@ssim)
- #60 General bugfixing (@wkerzendorf)
- #59 General bugfixing (@wkerzendorf, @nathanielatom, @ssim, @maryampatel)
- #54 Montecarlo/reflection (@ssim)
- #52 Montecarlo/reflection (@ssim, @wkerzendorf, @maryampatel, @nathanielatom)
- #51 Model/optimizig (@nathanielatom)
- #50 Gui/span (@nathanielatom)
- #49 Gui/span (@nathanielatom)
- #48 Gui/span (@nathanielatom, @wkerzendorf, @maryampatel)
- #39 General bugfixing (@wkerzendorf, @nathanielatom, @maryampatel)
- #46 Gui/dialogue (@nathanielatom, @wkerzendorf)
- #41 Gui/docs (@nathanielatom)
- #40 Gui/matplotlib figure (@nathanielatom, @maryampatel)
- #34 General bugfixing (@wkerzendorf)
- #32 Plasma/testing2 (@maryampatel)
- #29 General bugfixing looks good to me (@wkerzendorf)
- #28 The same as last time but with small changes. (@mklauser)
- #26 Plasma/bound free (@mklauser)
- #25 Simulation/run single simulation (@wkerzendorf)
- #24 Montecarlo/extract - seems fine merging (@ssim)
- #22 Montecarlo/fix convergence (@wkerzendorf, @ssim)
- #20 Plasma/testing (@maryampatel)
- #18 Docs/fixdocs (@maryampatel)
- #17 Docs/fixdocs (@maryampatel)
- #16 Doc/atomic preliminary merge (@maryampatel)
- #14 Implemented all changes (@maryampatel)
- #13 Changed the main documentation page (@maryampatel)