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DESCRIPTION
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DESCRIPTION
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Package: tximport
Version: 1.31.1
Title: Import and summarize transcript-level estimates for transcript- and
gene-level analysis
Description: Imports transcript-level abundance, estimated counts and
transcript lengths, and summarizes into matrices for use with
downstream gene-level analysis packages. Average transcript
length, weighted by sample-specific transcript abundance
estimates, is provided as a matrix which can be used as an
offset for different expression of gene-level counts.
Author: Michael Love [cre,aut], Charlotte Soneson [aut], Mark Robinson [aut],
Rob Patro [ctb], Andrew Parker Morgan [ctb], Ryan C. Thompson [ctb],
Matt Shirley [ctb], Avi Srivastava [ctb]
Maintainer: Michael Love <michaelisaiahlove@gmail.com>
License: LGPL (>=2)
VignetteBuilder: knitr
Imports: utils, stats, methods
Suggests: knitr, rmarkdown, testthat, tximportData,
TxDb.Hsapiens.UCSC.hg19.knownGene, readr (>= 0.2.2),
arrow, limma, edgeR, DESeq2 (>= 1.11.6),
rhdf5, jsonlite, matrixStats, Matrix, eds
URL: https://github.com/thelovelab/tximport
biocViews: DataImport, Preprocessing,
RNASeq, Transcriptomics, Transcription, GeneExpression,
ImmunoOncology
RoxygenNote: 7.2.3
NeedsCompilation: no
Encoding: UTF-8