diff --git a/website/src/app/api/utils.ts b/website/src/app/api/utils.ts
index fdd57419..a1f8c11c 100644
--- a/website/src/app/api/utils.ts
+++ b/website/src/app/api/utils.ts
@@ -104,7 +104,6 @@ export function generatePipelineConfig(
               : processSchemaItem(item.subType as SchemaItem);
           return `list[${subType}]`;
         } else if (item.type === "dict") {
-          console.log(item);
           if (!item.subType) {
             throw new Error(
               `Dict/Object type must specify its structure for field: ${item.key}`
@@ -234,6 +233,8 @@ export function generatePipelineConfig(
 
   const yamlString = yaml.dump(pipelineConfig);
 
+  console.log(yamlString);
+
   return {
     yamlString,
     inputPath,
diff --git a/website/src/components/PipelineGui.tsx b/website/src/components/PipelineGui.tsx
index 8333203f..4e702334 100644
--- a/website/src/components/PipelineGui.tsx
+++ b/website/src/components/PipelineGui.tsx
@@ -551,10 +551,13 @@ const PipelineGUI: React.FC = () => {
 
   const onRunAll = useCallback(
     async (clear_intermediate: boolean) => {
-      const lastOpIndex = operations.length - 1;
-      if (lastOpIndex < 0) return;
+      // Find the last visible operation
+      const lastVisibleOpIndex = operations.findLastIndex(
+        (op) => op.visibility !== false
+      );
+      if (lastVisibleOpIndex < 0) return;
 
-      const lastOperation = operations[lastOpIndex];
+      const lastOperation = operations[lastVisibleOpIndex];
       setOptimizerProgress(null);
       setIsLoadingOutputs(true);
       setNumOpRun((prevNum) => {