From 2db7a5b858ca7b6e7df7d3001ab179987f46924e Mon Sep 17 00:00:00 2001 From: Alex Nelson Date: Tue, 5 Mar 2024 14:29:28 -0500 Subject: [PATCH 1/2] Reformat license text No effects were observed on Make-managed files. Signed-off-by: Alex Nelson --- Makefile | 4 ++-- dependencies/Makefile | 4 ++-- ontology/Makefile | 4 ++-- shapes/Makefile | 4 ++-- tests/Makefile | 4 ++-- tests/test_exemplar_coverage.py | 4 ++-- 6 files changed, 12 insertions(+), 12 deletions(-) diff --git a/Makefile b/Makefile index 7dfdff3..5b311a8 100644 --- a/Makefile +++ b/Makefile @@ -1,7 +1,7 @@ #!/usr/bin/make -f -# Portions of this file contributed by NIST are governed by the following -# statement: +# Portions of this file contributed by NIST are governed by the +# following statement: # # This software was developed at the National Institute of Standards # and Technology by employees of the Federal Government in the course diff --git a/dependencies/Makefile b/dependencies/Makefile index 5b8603a..9134766 100644 --- a/dependencies/Makefile +++ b/dependencies/Makefile @@ -1,7 +1,7 @@ #!/usr/bin/make -f -# Portions of this file contributed by NIST are governed by the following -# statement: +# Portions of this file contributed by NIST are governed by the +# following statement: # # This software was developed at the National Institute of Standards # and Technology by employees of the Federal Government in the course diff --git a/ontology/Makefile b/ontology/Makefile index b5b6ad4..261a613 100644 --- a/ontology/Makefile +++ b/ontology/Makefile @@ -1,7 +1,7 @@ #!/usr/bin/make -f -# Portions of this file contributed by NIST are governed by the following -# statement: +# Portions of this file contributed by NIST are governed by the +# following statement: # # This software was developed at the National Institute of Standards # and Technology by employees of the Federal Government in the course diff --git a/shapes/Makefile b/shapes/Makefile index e6360e7..ed4546c 100644 --- a/shapes/Makefile +++ b/shapes/Makefile @@ -1,7 +1,7 @@ #!/usr/bin/make -f -# Portions of this file contributed by NIST are governed by the following -# statement: +# Portions of this file contributed by NIST are governed by the +# following statement: # # This software was developed at the National Institute of Standards # and Technology by employees of the Federal Government in the course diff --git a/tests/Makefile b/tests/Makefile index ca8139e..239f9cd 100644 --- a/tests/Makefile +++ b/tests/Makefile @@ -1,7 +1,7 @@ #!/usr/bin/make -f -# Portions of this file contributed by NIST are governed by the following -# statement: +# Portions of this file contributed by NIST are governed by the +# following statement: # # This software was developed at the National Institute of Standards # and Technology by employees of the Federal Government in the course diff --git a/tests/test_exemplar_coverage.py b/tests/test_exemplar_coverage.py index b5388a5..a6ce568 100644 --- a/tests/test_exemplar_coverage.py +++ b/tests/test_exemplar_coverage.py @@ -1,7 +1,7 @@ #!/usr/bin/env python3 -# Portions of this file contributed by NIST are governed by the following -# statement: +# Portions of this file contributed by NIST are governed by the +# following statement: # # This software was developed at the National Institute of Standards # and Technology by employees of the Federal Government in the course From 8a10ddf416700daaa458fc4d8fa3af01b8a3739e Mon Sep 17 00:00:00 2001 From: Alex Nelson Date: Tue, 5 Mar 2024 14:34:57 -0500 Subject: [PATCH 2/2] Add IRI-restricted RDFS entailment to exemplars review The Python script entail.py was copied from CDO-Shapes-Examples. No effects were observed on Make-managed files. Signed-off-by: Alex Nelson --- src/entail.py | 161 +++++++++++++++++++++++++++++++++++++++++++++++ tests/.gitignore | 2 + tests/Makefile | 28 ++++++++- 3 files changed, 189 insertions(+), 2 deletions(-) create mode 100644 src/entail.py diff --git a/src/entail.py b/src/entail.py new file mode 100644 index 0000000..682ca8f --- /dev/null +++ b/src/entail.py @@ -0,0 +1,161 @@ +#!/usr/bin/env python3 + +# Portions of this file contributed by NIST are governed by the +# following statement: +# +# This software was developed at the National Institute of Standards +# and Technology by employees of the Federal Government in the course +# of their official duties. Pursuant to Title 17 Section 105 of the +# United States Code, this software is not subject to copyright +# protection within the United States. NIST assumes no responsibility +# whatsoever for its use by other parties, and makes no guarantees, +# expressed or implied, about its quality, reliability, or any other +# characteristic. +# +# We would appreciate acknowledgement if the software is used. + +""" +This script implements a restricted set of RDFS entailment patterns, sourced from here: + +https://www.w3.org/TR/rdf11-mt/#patterns-of-rdfs-entailment-informative + +The implementation is a subset of the 13 patterns, as well as restricting the entailments to only IRI-identified nodes. +""" + +__version__ = "0.1.0" + +import argparse +from typing import Dict + +from rdflib import Graph, URIRef + + +def main() -> None: + parser = argparse.ArgumentParser() + parser.add_argument("out_graph") + parser.add_argument("in_graph", nargs="+") + args = parser.parse_args() + + out_graph = Graph() + in_graph = Graph() + + for _in_graph_file in args.in_graph: + in_graph.parse(_in_graph_file) + + in_and_out_graph = Graph() + in_and_out_graph += in_graph + + pattern_to_construct_query: Dict[str, str] = { + "rdfs2": """\ +PREFIX rdf: +PREFIX rdfs: +CONSTRUCT { + ?yyy rdf:type ?xxx . +} +WHERE { + ?aaa rdfs:domain ?xxx . + ?yyy ?aaa ?zzz . + FILTER isIRI(?aaa) + FILTER isIRI(?xxx) + FILTER isIRI(?yyy) + FILTER isIRI(?zzz) +} +""", + "rdfs3": """\ +PREFIX rdf: +PREFIX rdfs: +CONSTRUCT { + ?zzz rdf:type ?xxx . +} +WHERE { + ?aaa rdfs:range ?xxx . + ?yyy ?aaa ?zzz . + FILTER isIRI(?aaa) + FILTER isIRI(?xxx) + FILTER isIRI(?yyy) + FILTER isIRI(?zzz) +} +""", + "rdfs5": """\ +PREFIX rdf: +PREFIX rdfs: +CONSTRUCT { + ?xxx rdfs:subPropertyOf ?zzz . +} +WHERE { + ?xxx rdfs:subPropertyOf ?yyy . + ?yyy rdfs:subPropertyOf ?zzz . + FILTER isIRI(?xxx) + FILTER isIRI(?yyy) + FILTER isIRI(?zzz) +} +""", + "rdfs7": """\ +PREFIX rdf: +PREFIX rdfs: +CONSTRUCT { + ?xxx ?bbb ?yyy . +} +WHERE { + ?aaa rdfs:subPropertyOf ?bbb . + ?xxx ?aaa ?yyy . + FILTER isIRI(?aaa) + FILTER isIRI(?bbb) + FILTER isIRI(?xxx) + FILTER isIRI(?yyy) +} +""", + "rdfs9": """\ +PREFIX rdf: +PREFIX rdfs: +CONSTRUCT { + ?zzz rdf:type ?yyy . +} +WHERE { + ?xxx rdfs:subClassOf ?yyy . + ?zzz rdf:type ?xxx . + FILTER isIRI(?xxx) + FILTER isIRI(?yyy) + FILTER isIRI(?zzz) +} +""", + "rdfs11": """\ +PREFIX rdf: +PREFIX rdfs: +CONSTRUCT { + ?xxx rdfs:subClassOf ?zzz . +} +WHERE { + ?xxx rdfs:subClassOf ?yyy . + ?yyy rdfs:subClassOf ?zzz . + FILTER isIRI(?xxx) + FILTER isIRI(?yyy) + FILTER isIRI(?zzz) +} +""", + } + + tmp_graph: Graph + while True: + tmp_graph = Graph() + for pattern in pattern_to_construct_query: + construct_query = pattern_to_construct_query[pattern] + for construct_result in in_and_out_graph.query(construct_query): + assert isinstance(construct_result, tuple) + assert isinstance(construct_result[0], URIRef) + assert isinstance(construct_result[1], URIRef) + assert isinstance(construct_result[2], URIRef) + tmp_graph.add( + (construct_result[0], construct_result[1], construct_result[2]) + ) + if len(tmp_graph - in_and_out_graph) == 0: + break + for triple in tmp_graph.triples((None, None, None)): + in_and_out_graph.add(triple) + out_graph.add(triple) + + out_graph.serialize(args.out_graph) + + +if __name__ == "__main__": + main() diff --git a/tests/.gitignore b/tests/.gitignore index a750c82..4a2adca 100644 --- a/tests/.gitignore +++ b/tests/.gitignore @@ -1 +1,3 @@ +exemplars-entailment.ttl +exemplars-expanded.ttl monolithic.ttl diff --git a/tests/Makefile b/tests/Makefile index 239f9cd..306a163 100644 --- a/tests/Makefile +++ b/tests/Makefile @@ -28,14 +28,14 @@ all: \ monolithic.ttl .pyshacl.done.log: \ - exemplars.ttl \ + exemplars-expanded.ttl \ monolithic.ttl source $(top_srcdir)/venv/bin/activate \ && pyshacl \ --metashacl \ --ont-graph monolithic.ttl \ --shacl monolithic.ttl \ - exemplars.ttl + exemplars-expanded.ttl touch $@ .pytest.done.log: \ @@ -54,8 +54,32 @@ check: \ clean: @rm -f \ .*.done.log \ + exemplars-entailment.ttl \ + exemplars-expanded.ttl \ monolithic.ttl +exemplars-entailment.ttl: \ + $(top_srcdir)/.venv.done.log \ + $(top_srcdir)/src/entail.py \ + exemplars.ttl \ + monolithic.ttl + source $(top_srcdir)/venv/bin/activate \ + && python3 $(top_srcdir)/src/entail.py \ + _$@ \ + exemplars.ttl \ + monolithic.ttl + mv _$@ $@ + +exemplars-expanded.ttl: \ + exemplars-entailment.ttl + source $(top_srcdir)/venv/bin/activate \ + && rdfpipe \ + --output-format turtle \ + exemplars.ttl \ + $< \ + > _$@ + mv _$@ $@ + monolithic.ttl: \ $(top_srcdir)/.venv.done.log \ $(top_srcdir)/dependencies/imports-transitive.ttl \