README.md

LocalStorage deployment

A simple LocalStorage deployment using default settings is available under the compose.yml file in this directory.

To run, use:

docker compose up

This launches a LocalStorage htsget-actix server serving data from the data directory.

The htsget-rs server can then be queried:

curl http://127.0.0.1:8080/reads/data/bam/htsnexus_test_NA12878

Which outputs:

{
  "htsget": {
    "format": "BAM",
    "urls": [
      {
        "url": "http://0.0.0.0:8081/data/bam/htsnexus_test_NA12878.bam",
        "headers": {
          "Range": "bytes=0-2596770"
        }
      },
      {
        "url": "data:;base64,H4sIBAAAAAAA/wYAQkMCABsAAwAAAAAAAAAAAA=="
      }
    ]
  }
}

The volumes of the compose.yml can be changed to any directory to serve data from it using default settings, and curl http://127.0.0.1:8080/reads/data/<id>, noting the extra data prefix.