windows_manual_build.txt

# install MinGW (here installed in G:\msys64)

# install other dependencies
pacman --noconfirm -Syu
pacman --noconfirm -S msys/git
pacman --noconfirm -S mingw64/mingw-w64-x86_64-gcc
pacman --noconfirm -S mingw64/mingw-w64-x86_64-gcc-fortran
pacman --noconfirm -S mingw64/mingw-w64-x86_64-cmake
pacman --noconfirm -S mingw64/mingw-w64-x86_64-doxygen
pacman --noconfirm -S msys/make
pacman --noconfirm -S mingw-w64-x86_64-pkg-config
pacman --noconfirm -S mingw-w64-x86_64-hdf5
pacman --noconfirm -S mingw-w64-x86_64-libzip
pacman --noconfirm -S mingw-w64-x86_64-netcdf

# checkout and build in g:\workspace
mkdir g:\workspace
cd g:\workspace
git clone https://github.com/virtualcell/vcell-solvers.git
cd vcell-solvers
mkdir build
mkdir build/bin
cd build

# the following needs to run in powershell

$Env:Path = "G:\msys64\mingw64\bin" + ";" + "G:\msys64\usr\bin" + ";" + $Env:Path
Write-Host "calling cmake in " + $pwd

# NFsim only

cmake -G "Unix Makefiles" `
    -DCMAKE_BUILD_TYPE="Release" `
    -DOPTION_TARGET_MESSAGING=OFF `
    -DOPTION_TARGET_PARALLEL=OFF `
    -DOPTION_TARGET_CHOMBO2D_SOLVER=OFF `
    -DOPTION_TARGET_CHOMBO3D_SOLVER=OFF `
    -DOPTION_TARGET_SMOLDYN_SOLVER=OFF `
    -DOPTION_TARGET_FV_SOLVER=OFF `
    -DOPTION_TARGET_STOCHASTIC_SOLVER=OFF `
    -DOPTION_TARGET_NFSIM_SOLVER=ON `
    -DOPTION_TARGET_MOVINGBOUNDARY_SOLVER=OFF `
    -DOPTION_TARGET_SUNDIALS_SOLVER=OFF `
    -DOPTION_TARGET_HY3S_SOLVERS=OFF `
     ..

# All local windows solvers
     
cmake -G "Unix Makefiles" `
    -DCMAKE_BUILD_TYPE="Release" `
    -DOPTION_TARGET_MESSAGING=OFF `
    -DOPTION_TARGET_PARALLEL=OFF `
    -DOPTION_TARGET_CHOMBO2D_SOLVER=OFF `
    -DOPTION_TARGET_CHOMBO3D_SOLVER=OFF `
    -DOPTION_TARGET_SMOLDYN_SOLVER=ON `
    -DOPTION_TARGET_FV_SOLVER=ON `
    -DOPTION_TARGET_STOCHASTIC_SOLVER=ON `
    -DOPTION_TARGET_NFSIM_SOLVER=ON `
    -DOPTION_TARGET_MOVINGBOUNDARY_SOLVER=OFF `
    -DOPTION_TARGET_SUNDIALS_SOLVER=ON `
    -DOPTION_TARGET_HY3S_SOLVERS=OFF `
     ..
     
# run make in build directory
make