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nas_singleNeuron1_sim_activeConfig.m
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nas_singleNeuron1_sim_activeConfig.m
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function varargout = nas_singleNeuron1_sim_activeConfig(varargin)
% NAS_SINGLENEURON1_SIM_ACTIVECONFIG MATLAB code for nas_singleNeuron1_sim_activeConfig.fig
% NAS_SINGLENEURON1_SIM_ACTIVECONFIG, by itself, creates a new NAS_SINGLENEURON1_SIM_ACTIVECONFIG or raises the existing
% singleton*.
%
% H = NAS_SINGLENEURON1_SIM_ACTIVECONFIG returns the handle to a new NAS_SINGLENEURON1_SIM_ACTIVECONFIG or the handle to
% the existing singleton*.
%
% NAS_SINGLENEURON1_SIM_ACTIVECONFIG('CALLBACK',hObject,eventData,handles,...) calls the local
% function named CALLBACK in NAS_SINGLENEURON1_SIM_ACTIVECONFIG.M with the given input arguments.
%
% NAS_SINGLENEURON1_SIM_ACTIVECONFIG('Property','Value',...) creates a new NAS_SINGLENEURON1_SIM_ACTIVECONFIG or raises the
% existing singleton*. Starting from the left, property value pairs are
% applied to the GUI before nas_singleNeuron1_sim_activeConfig_OpeningFcn gets called. An
% unrecognized property name or invalid value makes property application
% stop. All inputs are passed to nas_singleNeuron1_sim_activeConfig_OpeningFcn via varargin.
%
% *See GUI Options on GUIDE's Tools menu. Choose "GUI allows only one
% instance to run (singleton)".
%
% See also: GUIDE, GUIDATA, GUIHANDLES
% Edit the above text to modify the response to help nas_singleNeuron1_sim_activeConfig
% Last Modified by GUIDE v2.5 29-Sep-2017 13:34:41
% Begin initialization code - DO NOT EDIT
gui_Singleton = 1;
gui_State = struct('gui_Name', mfilename, ...
'gui_Singleton', gui_Singleton, ...
'gui_OpeningFcn', @nas_singleNeuron1_sim_activeConfig_OpeningFcn, ...
'gui_OutputFcn', @nas_singleNeuron1_sim_activeConfig_OutputFcn, ...
'gui_LayoutFcn', [] , ...
'gui_Callback', []);
if nargin && ischar(varargin{1})
gui_State.gui_Callback = str2func(varargin{1});
end
if nargout
[varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:});
else
gui_mainfcn(gui_State, varargin{:});
end
% End initialization code - DO NOT EDIT
% --- Executes just before nas_singleNeuron1_sim_activeConfig is made visible.
function nas_singleNeuron1_sim_activeConfig_OpeningFcn(hObject, eventdata, handles, varargin)
% This function has no output args, see OutputFcn.
% hObject handle to figure
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% varargin command line arguments to nas_singleNeuron1_sim_activeConfig (see VARARGIN)
% Choose default command line output for nas_singleNeuron1_sim_activeConfig
handles.output = hObject;
global NAS;
set(handles.edit2, 'String', NAS.data.parameters.('simulationParams').('input').('nameChosen'));
set(handles.popupmenu7, 'String', NAS.data.parameters.('simulationParams').('input').('inputTypes'));
set(handles.popupmenu8, 'String', NAS.data.parameters.('simulationParams').('input').('waveForms'));
set(handles.popupmenu9, 'String', NAS.data.parameters.('simulationParams').('input').('targets'));
set(handles.edit3, 'String', sprintf('%.1f', NAS.data.parameters.('simulationParams').('input').('trapezoid').('t1')));
set(handles.edit11, 'String', sprintf('%.1f', NAS.data.parameters.('simulationParams').('input').('trapezoid').('t2')));
set(handles.edit12, 'String', sprintf('%.1f', NAS.data.parameters.('simulationParams').('input').('trapezoid').('t3')));
set(handles.edit13, 'String', sprintf('%.1f', NAS.data.parameters.('simulationParams').('input').('trapezoid').('t4')));
set(handles.edit14, 'String', sprintf('%.1f', NAS.data.parameters.('simulationParams').('input').('trapezoid').('i1')));
set(handles.edit15, 'String', sprintf('%.1f', NAS.data.parameters.('simulationParams').('input').('trapezoid').('i2')));
% Assign a name to appear in the window title.
set(hObject,'Name','Neuron Analyzer and Simulator');
% Move the window to the center of the screen.
movegui(hObject,'center')
[numOfSegments, localData, flagForSpliting] = calculateLocalPropSingleNeuron (NAS.guiData.selectedNeuron, NAS.data.parameters, NAS.data.parameters.geometryType, NAS.data.parameters.maxCompartmentLength);
NAS.data.properties.('custom').('data').('local') = localData;
display('.................');
display(sprintf('Processing electrotonics: %s', NAS.guiData.selectedNeuron));
display('.................');
NAS.data.properties.custom = processElectrotonicData2 (NAS.data.properties.custom, NAS.data.parameters.passiveParams, NAS.data.parameters.geometryType);
display('.................');
display(sprintf('Processing Sholl-like analysis: %s', NAS.guiData.selectedNeuron));
display('.................');
NAS.data.properties.custom.('data').('somatofugal').('euclidian') = getSomatofugalProperties3 (NAS.data.properties.custom, NAS.data.parameters, 'euclidian', 0, 0);
NAS.data.properties.custom.('data').('somatofugal').('path') = getSomatofugalProperties3 (NAS.data.properties.custom, NAS.data.parameters, 'path', 0, 0);
NAS.data.properties.custom.('data').('somatofugal').('order') = getSomatofugalProperties3 (NAS.data.properties.custom, NAS.data.parameters, 'order', 0, 0);
display('.................');
display(sprintf('Processing dendritic trees: %s', NAS.guiData.selectedNeuron));
display('.................');
[NAS.data.properties.custom.('data').('branchLevel'), NAS.data.properties.custom.('data').('treeLevel'),...
zeroOrderSegments, NAS.data.properties.custom.('data').('local').segmentsFromUnbranchedSubTrees] = getTreeProperties2 (NAS.data.properties.custom, NAS.data.parameters);
NAS.data.properties.custom.('data').('zeroOrderSegments') = zeroOrderSegments;
display('.................');
display(sprintf('Processing global properties: %s', NAS.guiData.selectedNeuron));
display('.................');
NAS.data.properties.custom.('data').('neuronLevel') = calculateGlobalProp (NAS.data.properties.custom, NAS.data.parameters);
set(handles.text18,'String',sprintf('Setting input to neuron: %s',NAS.guiData.selectedNeuron));
set(handles.text18,'Visible','on');
% Update handles structure
guidata(hObject, handles);
% UIWAIT makes nas_singleNeuron1_sim_activeConfig wait for user response (see UIRESUME)
% uiwait(handles.figure1);
% --- Outputs from this function are returned to the command line.
function varargout = nas_singleNeuron1_sim_activeConfig_OutputFcn(hObject, eventdata, handles)
% varargout cell array for returning output args (see VARARGOUT);
% hObject handle to figure
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Get default command line output from handles structure
varargout{1} = handles.output;
% --- Executes on selection change in popupmenu1.
function popupmenu1_Callback(hObject, eventdata, handles)
% hObject handle to popupmenu1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: contents = cellstr(get(hObject,'String')) returns popupmenu1 contents as cell array
% contents{get(hObject,'Value')} returns selected item from popupmenu1
% --- Executes during object creation, after setting all properties.
function popupmenu1_CreateFcn(hObject, eventdata, handles)
% hObject handle to popupmenu1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: popupmenu controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
% --- Executes on selection change in listbox1.
function listbox1_Callback(hObject, eventdata, handles)
% hObject handle to listbox1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: contents = cellstr(get(hObject,'String')) returns listbox1 contents as cell array
% contents{get(hObject,'Value')} returns selected item from listbox1
% --- Executes during object creation, after setting all properties.
function listbox1_CreateFcn(hObject, eventdata, handles)
% hObject handle to listbox1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: listbox controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
% --------------------------------------------------------------------
function menu_home_Callback(hObject, eventdata, handles)
% hObject handle to menu_home (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
global NAS;
set(NAS.gui.home,'Visible','on');
% set(NAS.gui.single_sim,'Visible','off');
close(gcbf);
% --- Executes on button press in pushbutton5.
function pushbutton5_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton5 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
global NAS;
NAS.gui.single_analyze_3DTool = nas_singleNeuron1_analyze_3DTool;
set(NAS.gui.single_analyze_3DTool,'Visible','on');
% --- Executes on button press in pushbutton6.
function pushbutton6_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton6 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
global NAS;
str = sprintf(strcat('Measure values:\nNumber of segments: %d\nTotal area of stem dendrites: %.2f um\n',...
'Soma area: %.2f um^2\nTotal area: %.2f um^2\nTotal path length: %.2f um\nMaximum Euclidian distance: %.2f um\n',...
'Maximum path distance: %.2f um\nNumber of bifurcations: %d\nNumber of terminations: %d\nNumber of branches: %d\n',...
'Maximum branch order: %d \nSomatic input impedance: %.2f MOhm'),...
NAS.data.properties.custom.numOfSegments,...
NAS.data.properties.custom.data.neuronLevel.areaTotalStemDendrites,...
NAS.data.properties.custom.data.neuronLevel.areaSoma,...
NAS.data.properties.custom.data.neuronLevel.areaTotal,...
NAS.data.properties.custom.data.neuronLevel.totalPathLength,...
NAS.data.properties.custom.data.neuronLevel.maxEuclidianDistance,...
NAS.data.properties.custom.data.neuronLevel.maxPathDistance,...
NAS.data.properties.custom.data.neuronLevel.numOfBifurcations,...
NAS.data.properties.custom.data.neuronLevel.numOfTerminations,...
NAS.data.properties.custom.data.neuronLevel.numOfBranches,...
NAS.data.properties.custom.data.neuronLevel.maxBranchOrder,...
NAS.data.properties.custom.data.neuronLevel.somaticInputImpedance);
set(handles.text7,'String', str);
set(handles.text7,'Visible','on');
set(handles.pushbutton8,'Visible','on');
set(handles.text8,'Visible','on');
set(handles.text9,'Visible','off');
set(handles.axes2,'Visible','off');
set(handles.popupmenu2,'Visible','on');
% --- Executes on button press in pushbutton7.
function pushbutton7_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton7 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
global NAS;
diameter = NAS.data.properties.custom.data.branchLevel.diameter;
[groupName{1:length(diameter)}] = deal('diameter');
boxplot(diameter, groupName', 'notch', 'on', ...
'orientation','horizontal', 'plotstyle', 'compact')
hnl = findobj(gca, 'Tag', 'NotchLo');
set(hnl, 'Marker', '+', 'MarkerSize', 9)
hnh = findobj(gca, 'Tag', 'NotchHi');
set(hnh, 'Marker', '+', 'MarkerSize', 9)
% sym = '.';
% siz = 22;
% xlabelSize = 8;
% ylabelSize = 5;
% titleSize = 9;
% axisFontSize = 5;
% legendFontSize = 9;
%
%
% featureNames = MNS.analysis.scenario7.data.neuronLevel.featureNamesMatrix.morphological;
% X = MNS.analysis.scenario7.data.neuronLevel.dataMatrix.morphological;
% labels = MNS.analysis.scenario7.data.neuronLevel.labelsMatrix.morphological;
% featureNamesShort = MNS.analysis.scenario7.data.neuronLevel.featureNamesShortMatrix.morphological;
%
% numOfLines =4;
% numOfColumns = 8;
%
%
% handles = [];
%
% for i = 1:length(featureNames)
% handles(i) = subplot(numOfLines, numOfColumns, i);
%
% boxplot(X(:,i),labels.partition, 'notch', 'on', ...
% 'orientation','horizontal', 'colorgroup', labels.lab, 'plotstyle', 'compact')
% hnl = findobj(gca, 'Tag', 'NotchLo');
% set(hnl, 'Marker', '+', 'MarkerSize', 9)
% hnh = findobj(gca, 'Tag', 'NotchHi');
% set(hnh, 'Marker', '+', 'MarkerSize', 9)
%
% xlabel(featureNamesShort(i), 'FontSize', xlabelSize)
% xlimit = get(gca, 'xlim');
% xlim([max([xlimit(1), 0]), xlimit(2)]);
%
% if strcmp(featureNames(i), 'Diameter (um)')
% xlim([0, 13]);
% elseif strcmp(featureNames(i), 'Radial distance (um)')
% xlim([-100, 1950]);
% elseif strcmp(featureNames(i), 'Fractal dimension')
% xlim([0.75, 1.3]);
% elseif strcmp(featureNames(i), 'Contraction')
% xlim([0.9, 2.25]);
% elseif strcmp(featureNames(i), 'Degree')
% xlim([0, 26]);
% elseif strcmp(featureNames(i), 'Partition asymmetry')
% xlim([-0.3, 1.3]);
% elseif strcmp(featureNames(i), 'Horton-Strahler index')
% xlim([0, 15.5]);
% elseif strcmp(featureNames(i), 'Branch-point Rall ratio')
% xlim([-0.1, 4]);
% elseif strcmp(featureNames(i), 'Euclidian length (um)')
% xlim([0, 970]);
% elseif strcmp(featureNames(i), 'Branch path length (um)')
% xlim([0, 1050]);
% elseif strcmp(featureNames(i), 'Area (um^2)')
% xlim([-50, 9005]);
% end
% end
%
% for i = 1:length(featureNames)
% line = floor((i-1)/numOfColumns) + 1;
% column = rem(i, numOfColumns);
% if column==0; column=numOfColumns; end
%
%
% if column==1
% set(handles(i),'ytickmode','auto','yticklabelmode','auto')
% ylimits = get(handles(i), 'ylim');
% minimum = ylimits(1) + 0.5;
% maximum = ylimits(2) - 0.5;
% set(handles(i),'ytick', linspace(minimum,maximum,12));
% set(handles(i),'yticklabel', {'p1'; 'p2'; 'p3'; 'p4'; 'p5'; 'p6'; 'p7'; 'p8'; 'p9'; 'p10'; 'p11'; 'p12'});
% set(handles(i), 'Position', [0.05 + 0.9*((column-1)/numOfColumns), 1.06 - line/numOfLines, 0.11, 0.18]);
%
% else
% set(handles(i),'ytickmode','auto','yticklabelmode','auto')
% set(handles(i),'ytick', [0]);
% set(handles(i),'yticklabel', {'.'});
% set(handles(i), 'Position', [0.05 + 0.9*((column-1)/numOfColumns), 1.06 - line/numOfLines, 0.11, 0.18]);
% end
%
%
%
% set(handles(i), 'FontSize', axisFontSize);
% set(findobj(handles(i),'Type','text'),'FontSize',axisFontSize)
%
% end
function edit1_Callback(hObject, eventdata, handles)
% hObject handle to edit1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: get(hObject,'String') returns contents of edit1 as text
% str2double(get(hObject,'String')) returns contents of edit1 as a double
% --- Executes during object creation, after setting all properties.
function edit1_CreateFcn(hObject, eventdata, handles)
% hObject handle to edit1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: edit controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
% --- Executes on button press in pushbutton8.
function pushbutton8_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton8 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
global NAS;
h = handles.popupmenu2;
contents = cellstr(get(h,'String'));
str = contents{get(h,'Value')};
if strcmp(str, 'ASCII text file (*.txt)')
disp('ASCII text file (*.txt)')
[FileName,PathName,FilterIndex] = uiputfile('exported_data.txt');
if FilterIndex
fid = fopen(FileName, 'wt+');
a=get(handles.text7, 'String');
for i = 1:size(a, 1)
fprintf(fid, '%s\n',a(i,:));
end
fclose(fid);
end
end
if strcmp(str, 'Matlab data (*.mat)')
disp('Matlab data (*.mat)')
[FileName,PathName,FilterIndex] = uiputfile('exported_data.mat');
if FilterIndex
% a=get(handles.text7, 'String');
a=NAS.data.properties.custom.data.neuronLevel;
save(FileName, 'a');
end
end
% [FileName,PathName] = uiputfile;
% a = handles.text7;
% save(FileName, 'a');
% firstColumn = ['numOfSegments'; NAS.data.properties.custom.data.neuronLevel.names; 'somaticInputImpedance']'
% save('absoluteData.txt','firstColumn','-ascii')
% type('absoluteData.txt')
% --- Executes on selection change in popupmenu2.
function popupmenu2_Callback(hObject, eventdata, handles)
% hObject handle to popupmenu2 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: contents = cellstr(get(hObject,'String')) returns popupmenu2 contents as cell array
% contents{get(hObject,'Value')} returns selected item from popupmenu2
% Update handles structure
% contents = cellstr(get(hObject,'String'));
% contents{get(hObject,'Value')}
guidata(hObject, handles);
% --- Executes during object creation, after setting all properties.
function popupmenu2_CreateFcn(hObject, eventdata, handles)
% hObject handle to popupmenu2 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: popupmenu controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
% --- Executes on button press in pushbutton9.
function pushbutton9_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton9 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
global NAS;
NAS.gui.single_analyze_configParams = nas_singleNeuron1_analyze_configParams;
% set(NAS.gui.single_analyze,'Visible','on');
set(NAS.gui.single_analyze_configParams,'Visible','on');
% --- Executes on selection change in popupmenu3.
function popupmenu3_Callback(hObject, eventdata, handles)
% hObject handle to popupmenu3 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: contents = cellstr(get(hObject,'String')) returns popupmenu3 contents as cell array
% contents{get(hObject,'Value')} returns selected item from popupmenu3
global NAS;
contents = cellstr(get(hObject,'String'));
chosenProp = contents{get(hObject,'Value')};
prop = NAS.data.properties.custom.data.branchLevel.(chosenProp);
% [groupName{1:length(prop)}] = deal(chosenProp);
boxplot(prop, 'notch', 'on', ...
'orientation','horizontal', 'plotstyle', 'compact')
title(chosenProp)
set(gca,'yticklabel',{[]})
hnl = findobj(gca, 'Tag', 'NotchLo');
set(hnl, 'Marker', '+', 'MarkerSize', 9)
hnh = findobj(gca, 'Tag', 'NotchHi');
set(hnh, 'Marker', '+', 'MarkerSize', 9)
% str = sprintf(strcat('Measure values:\nNumber of segments: %d\nTotal area of stem dendrites: %.2f um\n',...
% 'Soma area: %.2f um^2\nTotal area: %.2f um^2\nTotal path length: %.2f um\nMaximum Euclidian distance: %.2f um\n',...
% 'Maximum path distance: %.2f um\nNumber of bifurcations: %d\nNumber of terminations: %d\nNumber of branches: %d\n',...
% 'Maximum branch order: %d \nSomatic input impedance: %.2f MOhm'),...
% NAS.data.properties.custom.numOfSegments,...
% NAS.data.properties.custom.data.neuronLevel.areaTotalStemDendrites,...
% NAS.data.properties.custom.data.neuronLevel.areaSoma,...
% NAS.data.properties.custom.data.neuronLevel.areaTotal,...
% NAS.data.properties.custom.data.neuronLevel.totalPathLength,...
% NAS.data.properties.custom.data.neuronLevel.maxEuclidianDistance,...
% NAS.data.properties.custom.data.neuronLevel.maxPathDistance,...
% NAS.data.properties.custom.data.neuronLevel.numOfBifurcations,...
% NAS.data.properties.custom.data.neuronLevel.numOfTerminations,...
% NAS.data.properties.custom.data.neuronLevel.numOfBranches,...
% NAS.data.properties.custom.data.neuronLevel.maxBranchOrder,...
% NAS.data.properties.custom.data.neuronLevel.somaticInputImpedance);
%
% set(handles.text9,'String', str);
% set(handles.text9,'Visible','on');
% set(handles.pushbutton8,'Visible','on');
set(handles.text7,'Visible','off');
set(handles.text9,'Visible','on');
set(handles.axes2,'Visible','on');
% --- Executes during object creation, after setting all properties.
function popupmenu3_CreateFcn(hObject, eventdata, handles)
% hObject handle to popupmenu3 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: popupmenu controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
% --- Executes on selection change in popupmenu4.
function popupmenu4_Callback(hObject, eventdata, handles)
% hObject handle to popupmenu4 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: contents = cellstr(get(hObject,'String')) returns popupmenu4 contents as cell array
% contents{get(hObject,'Value')} returns selected item from popupmenu4
% --- Executes during object creation, after setting all properties.
function popupmenu4_CreateFcn(hObject, eventdata, handles)
% hObject handle to popupmenu4 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: popupmenu controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
% --- Executes on selection change in popupmenu5.
function popupmenu5_Callback(hObject, eventdata, handles)
% hObject handle to popupmenu5 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: contents = cellstr(get(hObject,'String')) returns popupmenu5 contents as cell array
% contents{get(hObject,'Value')} returns selected item from popupmenu5
% --- Executes during object creation, after setting all properties.
function popupmenu5_CreateFcn(hObject, eventdata, handles)
% hObject handle to popupmenu5 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: popupmenu controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
% --- Executes on selection change in popupmenu6.
function popupmenu6_Callback(hObject, eventdata, handles)
% hObject handle to popupmenu6 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: contents = cellstr(get(hObject,'String')) returns popupmenu6 contents as cell array
% contents{get(hObject,'Value')} returns selected item from popupmenu6
% --- Executes during object creation, after setting all properties.
function popupmenu6_CreateFcn(hObject, eventdata, handles)
% hObject handle to popupmenu6 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: popupmenu controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
% --- Executes on button press in pushbutton10.
function pushbutton10_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton10 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
global NAS;
set(NAS.gui.single_sim,'Visible','off');
set(NAS.gui.single,'Visible','on');
% --- Executes on button press in pushbutton15.
function pushbutton15_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton15 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% --- Executes on button press in pushbutton12.
function pushbutton12_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton12 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
global NAS;
NAS.gui.single_analyze_configParams = nas_singleNeuron1_analyze_configParams;
% set(NAS.gui.single_analyze,'Visible','on');
set(NAS.gui.single_analyze_configParams,'Visible','on');
% --- Executes on button press in pushbutton13.
function pushbutton13_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton13 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
set(handles.uipanel6,'Visible','on');
set(handles.uipanel7,'Visible','off');
set(handles.uipanel9,'Visible','off');
set(handles.uipanel8,'Visible','off');
% --- Executes on button press in pushbutton14.
function pushbutton14_Callback(hObject, eventdata, handles)
global NAS;
axes(handles.axes4);
cla(gca, 'reset');
set(gca,'XTickMode','auto')
set(gca,'YTickMode','auto')
initialTime = NAS.data.parameters.('simulationParams').('initialTime');
finalTime = NAS.data.parameters.('simulationParams').('finalTime');
contents = cellstr(get(handles.popupmenu7,'String'));
value = get(handles.popupmenu7,'Value');
if strcmp(contents{value}, 'Injected current')
contents = cellstr(get(handles.popupmenu8,'String'));
value = get(handles.popupmenu8,'Value');
if strcmp(contents{value}, 'Trapezoid')
t1 = str2double(get(handles.edit3, 'String'));
t2 = str2double(get(handles.edit11, 'String'));
t3 = str2double(get(handles.edit12, 'String'));
t4 = str2double(get(handles.edit13, 'String'));
i1 = str2double(get(handles.edit14, 'String'));
i2 = str2double(get(handles.edit15, 'String'));
timeStep = 1;
numOfPoints = (finalTime - initialTime)/timeStep + 1;
x = zeros(numOfPoints, 1);
y = zeros(numOfPoints, 1);
idx = 0;
for t = initialTime:timeStep:finalTime
idx = idx + 1;
x(idx) = t;
y(idx) = getSignal('trapezoid', t1, t4, i1, i2, t, t2, t3);
end
h = plot(x, y);
set(h, 'LineStyle','none','Marker', 'o',...
'MarkerEdgeColor',[0.509, 0.309, 0.490],...
'MarkerFaceColor',[0.509, 0.309, 0.490],...
'MarkerSize',2)
xlabel('Time (ms)');
ylabel('Injected current (\muA/cm^2)');
set(gca,'xlim',[initialTime finalTime]);
clear 'idx' 'x' 'y';
else
msgbox('This function is unavailable at this development stage');
end
end
if strcmp(contents{value}, 'Synapse')
end
function edit2_Callback(hObject, eventdata, handles)
global NAS;
NAS.data.parameters.('simulationParams').('input').name = get(handles.edit2, 'String');
% --- Executes during object creation, after setting all properties.
function edit2_CreateFcn(hObject, eventdata, handles)
% hObject handle to edit2 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: edit controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
function edit3_Callback(hObject, eventdata, handles)
% hObject handle to edit3 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: get(hObject,'String') returns contents of edit3 as text
% str2double(get(hObject,'String')) returns contents of edit3 as a double
% --- Executes during object creation, after setting all properties.
function edit3_CreateFcn(hObject, eventdata, handles)
% hObject handle to edit3 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: edit controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
% --- Executes on selection change in listbox5.
function listbox5_Callback(hObject, eventdata, handles)
% hObject handle to listbox5 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: contents = cellstr(get(hObject,'String')) returns listbox5 contents as cell array
% contents{get(hObject,'Value')} returns selected item from listbox5
% --- Executes during object creation, after setting all properties.
function listbox5_CreateFcn(hObject, eventdata, handles)
% hObject handle to listbox5 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: listbox controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
% --- Executes on button press in pushbutton24.
function pushbutton24_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton24 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
contents = cellstr(get(handles.listbox5,'String'));
value = get(handles.listbox5,'Value');
str = contents{value};
contents2 = cellstr(get(handles.listbox4,'String'));
if strcmp(contents2{1}, 'none')
contents2{1} = [str];
else
contents2{end+1} = [str];
end
set(handles.listbox4, 'String', contents2);
% --- Executes on button press in pushbutton25.
function pushbutton25_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton25 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% --- Executes on button press in pushbutton26.
function pushbutton26_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton26 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% --- Executes on button press in pushbutton27.
function pushbutton27_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton27 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% --- Executes on selection change in listbox4.
function listbox4_Callback(hObject, eventdata, handles)
% hObject handle to listbox4 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: contents = cellstr(get(hObject,'String')) returns listbox4 contents as cell array
% contents{get(hObject,'Value')} returns selected item from listbox4
% --- Executes during object creation, after setting all properties.
function listbox4_CreateFcn(hObject, eventdata, handles)
% hObject handle to listbox4 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: listbox controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
% --- Executes on button press in pushbutton22.
function pushbutton22_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton22 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
set(handles.uipanel9,'Visible','on');
% --- Executes on button press in pushbutton23.
function pushbutton23_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton23 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
contents = cellstr(get(handles.listbox4,'String'));
idx = get(handles.listbox4,'Value');
if strcmp(contents{1}, 'none')
errordlg('There is no input yet');
else
contents(idx) = [];
end
if length(contents) == 0
contents{1} = 'none';
end
newValue = get(handles.listbox4, 'Value') - 1;
if newValue<=0
newValue=1;
end
set(handles.listbox4, 'String', contents, 'Value', newValue);
% --- Executes on selection change in listbox3.
function listbox3_Callback(hObject, eventdata, handles)
% hObject handle to listbox3 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: contents = cellstr(get(hObject,'String')) returns listbox3 contents as cell array
% contents{get(hObject,'Value')} returns selected item from listbox3
% --- Executes during object creation, after setting all properties.
function listbox3_CreateFcn(hObject, eventdata, handles)
% hObject handle to listbox3 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: listbox controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
% --- Executes on button press in pushbutton18.
function pushbutton18_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton18 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
contents = cellstr(get(handles.listbox3,'String'));
str = contents{get(handles.listbox3,'Value')};
contents2 = cellstr(get(handles.listbox2,'String'));
if strcmp(contents2{1}, 'none')
contents2{1} = [str];
else
contents2{end+1} = [str];
end
set(handles.listbox2, 'String', contents2);
% --- Executes on button press in pushbutton19.
function pushbutton19_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton19 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% --- Executes on button press in pushbutton20.
function pushbutton20_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton20 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% --- Executes on button press in pushbutton21.
function pushbutton21_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton21 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% --- Executes on selection change in listbox2.
function listbox2_Callback(hObject, eventdata, handles)
% hObject handle to listbox2 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: contents = cellstr(get(hObject,'String')) returns listbox2 contents as cell array
% contents{get(hObject,'Value')} returns selected item from listbox2
% --- Executes during object creation, after setting all properties.
function listbox2_CreateFcn(hObject, eventdata, handles)
% hObject handle to listbox2 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: listbox controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
% --- Executes on button press in pushbutton16.
function pushbutton16_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton16 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
set(handles.uipanel7,'Visible','on');
% --- Executes on button press in pushbutton17.
function pushbutton17_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton17 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
function edit9_Callback(hObject, eventdata, handles)
% hObject handle to edit9 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: get(hObject,'String') returns contents of edit9 as text
% str2double(get(hObject,'String')) returns contents of edit9 as a double
% --- Executes during object creation, after setting all properties.
function edit9_CreateFcn(hObject, eventdata, handles)
% hObject handle to edit9 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: edit controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
function edit10_Callback(hObject, eventdata, handles)
% hObject handle to edit10 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: get(hObject,'String') returns contents of edit10 as text
% str2double(get(hObject,'String')) returns contents of edit10 as a double
% --- Executes during object creation, after setting all properties.
function edit10_CreateFcn(hObject, eventdata, handles)
% hObject handle to edit10 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: edit controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
% --- Executes on button press in checkbox1.
function checkbox1_Callback(hObject, eventdata, handles)
% hObject handle to checkbox1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hint: get(hObject,'Value') returns toggle state of checkbox1
% --- Executes on button press in checkbox2.
function checkbox2_Callback(hObject, eventdata, handles)
% hObject handle to checkbox2 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hint: get(hObject,'Value') returns toggle state of checkbox2