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processMorphology.m
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processMorphology.m
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function properties = processMorphology(parameters, properties)
models_cellarray = parameters.models_cellarray;
mnFileNames_cellarray = parameters.mnFileNames_cellarray;
maxCompartmentLength = parameters.maxCompartmentLength;
geometryType = parameters.geometryType;
process = parameters.isProcess;
for i = 1:length(models_cellarray)
modelName = char(models_cellarray(i));
numOfMNs.(modelName) = length(mnFileNames_cellarray.(modelName));
if process.(modelName)
mnNames.(modelName) = cell(numOfMNs.(modelName),1);
for j = 1:numOfMNs.(modelName)
str = sprintf('%s%d', modelName, j);
mnNames.(modelName)(j) = cellstr(str);
display('.................');
display(sprintf('Processing: %s', str));
display('.................');
fileName = char(mnFileNames_cellarray.(modelName)(j));
[numOfSegments, localData, flagForSpliting] = calculateLocalProp (fileName, parameters, geometryType, maxCompartmentLength);
properties.(str).('numOfSegments') = numOfSegments;
properties.(str).('data').('local') = localData;
if flagForSpliting
str = sprintf('MNS: there are compartments larger than %d um in mn %s..\n They were splited to improve model convergence', maxCompartmentLength, str);
msgbox(str);
end
end
end
end
end