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geoparquet.go
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geoparquet.go
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package geoparquet
import (
"context"
"encoding/json"
"fmt"
"io"
_ "log/slog"
"net/url"
"os"
"strconv"
"sync"
"github.com/apache/arrow/go/v16/parquet"
"github.com/sfomuseum/go-edtf"
"github.com/tidwall/gjson"
"github.com/tidwall/sjson"
"github.com/whosonfirst/go-whosonfirst-spr/v2"
"github.com/whosonfirst/go-writer/v3"
"github.com/whosonfirst/gpq-fork/not-internal/geo"
"github.com/whosonfirst/gpq-fork/not-internal/geojson"
"github.com/whosonfirst/gpq-fork/not-internal/geoparquet"
"github.com/whosonfirst/gpq-fork/not-internal/pqutil"
)
// This is to account for the disconnect in the JSON-encoded properties between
// whosonfirst/go-whosonfirst-spr/v2.WOFStandardPlacesResult and WOFAltStandardPlacesResult
// Since the latter already has a "v3"-triggering bug (described below) that might also
// be the chance to change the default/expected properties for alt files; that will have
// a bunch of downstream side-effects so it's still TBD. Until then... this:
var ensure_alt_properties = map[string]any{
"edtf:inception": edtf.UNKNOWN,
"edtf:cessation": edtf.UNKNOWN,
"wof:country": "",
"wof:supersedes": []int64{},
"wof:supersedeb_by": []int64{},
"mz:is_current": -1,
"mz:is_ceased": -1,
"mz:is_deprecated": -1,
"mz:is_superseded": -1,
"mz:is_superseding": -1,
"wof:lastmodified": 0,
}
// GeoParquetWriter implements the `writer.Writer` interface for writing GeoParquet records.
type GeoParquetWriter struct {
writer.Writer
convert_options *geojson.ConvertOptions
io_writer io.WriteCloser
feature_writer *geoparquet.FeatureWriter
buffer []*geo.Feature
append_properties []string
mu *sync.RWMutex
}
func init() {
ctx := context.Background()
err := writer.RegisterWriter(ctx, "geoparquet", NewGeoParquetWriter)
if err != nil {
panic(err)
}
}
// NewGeoParquetWriter returns a new `writer.Writer` instance derived from 'uri'.
func NewGeoParquetWriter(ctx context.Context, uri string) (writer.Writer, error) {
u, err := url.Parse(uri)
if err != nil {
return nil, fmt.Errorf("Failed to create new writer, %w", err)
}
q := u.Query()
var io_writer io.WriteCloser
if u.Path == "" {
io_writer = os.Stdout
} else {
wr, err := os.OpenFile(u.Path, os.O_RDWR|os.O_CREATE, 0644)
if err != nil {
return nil, fmt.Errorf("Failed to open %s for writing, %w", u.Path, err)
}
io_writer = wr
}
min := 10
max := 100
compression := "zstd"
row_group_length := 10
if q.Has("min") {
v, err := strconv.Atoi(q.Get("min"))
if err != nil {
return nil, fmt.Errorf("Invalid ?min= property, %w", err)
}
min = v
}
if q.Has("max") {
v, err := strconv.Atoi(q.Get("max"))
if err != nil {
return nil, fmt.Errorf("Invalid ?max= property, %w", err)
}
max = v
}
if q.Has("compression") {
compression = q.Get("compression")
}
if q.Has("row-group-length") {
v, err := strconv.Atoi(q.Get("row-group-length"))
if err != nil {
return nil, fmt.Errorf("Invalid ?row-group-length= property, %w", err)
}
row_group_length = v
}
append_properties := q["append-property"]
convert_options := &geojson.ConvertOptions{
MinFeatures: min,
MaxFeatures: max,
Compression: compression,
RowGroupLength: row_group_length,
}
buffer := make([]*geo.Feature, 0)
mu := new(sync.RWMutex)
gpq := &GeoParquetWriter{
convert_options: convert_options,
io_writer: io_writer,
buffer: buffer,
append_properties: append_properties,
mu: mu,
}
return gpq, nil
}
// Write derives a `whosonfirst/go-whosonfirst-spr/v2.StandardPlaceResponse` and `whosonfirst/gpq-fork/not-internal/geo.Feature`
// instances from 'r' assigning the former to the latter's `Properties` element and then writes the feature to a GeoParquet database
// defined in the constructor.
func (gpq *GeoParquetWriter) Write(ctx context.Context, key string, r io.ReadSeeker) (int64, error) {
body, err := io.ReadAll(r)
if err != nil {
return 0, fmt.Errorf("Failed to read body for %s, %w", key, err)
}
is_alt := false
wof_spr, err := spr.WhosOnFirstSPR(body)
if err != nil {
alt_spr, err := spr.WhosOnFirstAltSPR(body)
if err != nil {
return 0, fmt.Errorf("Failed to derive SPR from %s, %w", key, err)
}
wof_spr = alt_spr
is_alt = true
}
// START OF wrangle properties in to something GeoParquet can work with
old_props := gjson.GetBytes(body, "properties")
body, err = sjson.SetBytes(body, "properties", wof_spr)
if err != nil {
return 0, fmt.Errorf("Failed to update properties for %s, %w", key, err)
}
body, err = sjson.SetBytes(body, "properties.mz:is_alt", is_alt)
if err != nil {
return 0, fmt.Errorf("Failed to assign mz:is_alt, %w", err)
}
alt_rsp := old_props.Get("src:alt_label")
body, err = sjson.SetBytes(body, "properties.src:alt_label", alt_rsp.String())
if err != nil {
return 0, fmt.Errorf("Failed to assign src:alt_label property, %w", err)
}
if len(gpq.append_properties) > 0 {
for _, rel_path := range gpq.append_properties {
abs_path := fmt.Sprintf("properties.%s", rel_path)
rsp := gjson.GetBytes(body, abs_path)
if rsp.Exists() {
continue
}
// Remember: This is a "properties" blob so the path
// should be relative
p_rsp := old_props.Get(rel_path)
// See this? We're assign a value even it doesn't exist because if we
// don't then we end up with uneven properties counts and Parquet is sad.
body, err = sjson.SetBytes(body, abs_path, p_rsp.Value())
if err != nil {
return 0, fmt.Errorf("Failed to assign %s to properties, %w", abs_path, err)
}
}
}
// Because the (internal) geoparquet/arrow schema builder is sad when it encounters empty arrays
// https://github.com/planetlabs/gpq/blob/main/internal/pqutil/arrow.go#L158-L165
ensure_length := []string{
"properties.wof:supersedes",
"properties.wof:superseded_by",
}
for _, path := range ensure_length {
rsp := gjson.GetBytes(body, path)
if !rsp.Exists() {
continue
}
if len(rsp.Array()) == 0 {
body, err = sjson.DeleteBytes(body, path)
if err != nil {
return 0, fmt.Errorf("Failed to delete 0-length %s property, %w", path, err)
}
}
}
if is_alt {
// Account for a bug in whosonfirst/go-whosonfirst-spr/v2.WOFAltStandardPlacesResult
// where the JSON encoding for wof:id returns a string instead of an int. Fixing this
// will trigger a "v3" event so until then... this:
id_rsp := gjson.GetBytes(body, "properties.wof:id")
body, err = sjson.SetBytes(body, "properties.wof:id", id_rsp.Int())
if err != nil {
return 0, fmt.Errorf("Failed to correct string wof:id value in alt record, %w", err)
}
// See notes for ensure_alt_properties above
for rel_path, v := range ensure_alt_properties {
path := fmt.Sprintf("propeties.%s", rel_path)
rsp := gjson.GetBytes(body, path)
if rsp.Exists() {
continue
}
body, err = sjson.SetBytes(body, path, v)
if err != nil {
return 0, fmt.Errorf("Failed to assign default alt value (%v) for %s, %w", v, path, err)
}
}
}
// END OF wrangle properties in to something GeoParquet can work with
var f *geo.Feature
err = json.Unmarshal(body, &f)
if err != nil {
return 0, fmt.Errorf("Failed to unmarshal Feature from %s, %w", key, err)
}
ready, err := gpq.ensureFeatureWriter(ctx, f)
if err != nil {
return 0, fmt.Errorf("Failed to ensure feature writer (%s), %w", key, err)
}
gpq.mu.Lock()
defer gpq.mu.Unlock()
if !ready {
gpq.buffer = append(gpq.buffer, f)
return -1, nil
}
err = gpq.flushBuffer(ctx)
if err != nil {
return 0, fmt.Errorf("Failed to flush pending buffer (%s), %w", key, err)
}
err = gpq.feature_writer.Write(f)
if err != nil {
return 0, fmt.Errorf("Failed to write %s, %w", key, err)
}
return -1, nil
}
// Close will close the underlying GeoParquet database.
func (gpq *GeoParquetWriter) Close(ctx context.Context) error {
gpq.mu.Lock()
defer gpq.mu.Unlock()
err := gpq.flushBuffer(ctx)
if err != nil {
return fmt.Errorf("Failed to flush buffer, %w", err)
}
if gpq.feature_writer != nil {
err := gpq.feature_writer.Close()
if err != nil {
return fmt.Errorf("Failed to close feature writer, %w", err)
}
}
return nil
}
func (gpq *GeoParquetWriter) ensureFeatureWriter(ctx context.Context, f *geo.Feature) (bool, error) {
gpq.mu.Lock()
defer gpq.mu.Unlock()
if gpq.feature_writer != nil {
return true, nil
}
builder := pqutil.NewArrowSchemaBuilder()
builder.Add(f.Properties)
err := builder.AddGeometry(geoparquet.DefaultGeometryColumn, geoparquet.DefaultGeometryEncoding)
if err != nil {
return false, err
}
if !builder.Ready() {
return false, nil
}
sc, err := builder.Schema()
if err != nil {
return true, err
}
var pqWriterProps *parquet.WriterProperties
var writerOptions []parquet.WriterProperty
if gpq.convert_options.Compression != "" {
compression, err := pqutil.GetCompression(gpq.convert_options.Compression)
if err != nil {
return true, err
}
writerOptions = append(writerOptions, parquet.WithCompression(compression))
}
if gpq.convert_options.RowGroupLength > 0 {
writerOptions = append(writerOptions, parquet.WithMaxRowGroupLength(int64(gpq.convert_options.RowGroupLength)))
}
if len(writerOptions) > 0 {
pqWriterProps = parquet.NewWriterProperties(writerOptions...)
}
gpq_wr, err := geoparquet.NewFeatureWriter(&geoparquet.WriterConfig{
Writer: gpq.io_writer,
ArrowSchema: sc,
ParquetWriterProps: pqWriterProps,
})
if err != nil {
return true, err
}
gpq.feature_writer = gpq_wr
return true, nil
}
func (gpq *GeoParquetWriter) flushBuffer(ctx context.Context) error {
if len(gpq.buffer) == 0 {
return nil
}
if gpq.feature_writer == nil {
return fmt.Errorf("Unable to flush records, feature writer not instantiated")
}
for _, f_buf := range gpq.buffer {
err := gpq.feature_writer.Write(f_buf)
if err != nil {
return fmt.Errorf("Failed to write buffered feature, %w", err)
}
}
gpq.buffer = make([]*geo.Feature, 0)
return nil
}