heatmap.xml

<tool id="interactive_tool_heatmap" tool_type="interactive" name="heatmap" version="1.0.0">
    <description>Visualize tsv dataMatrix files</description>
    <requirements>
        <container type="docker">emetabohub/heatmap:latest</container>
    </requirements>
    <entry_points>
        <entry_point name="Heatmat visualisation of $infile.display_name" requires_domain="True">
            <port>8765</port>
            <url>/</url>
        </entry_point>
    </entry_points>
    <command><![CDATA[
        ln -s ${infile} /srv/shiny-server/samples/heatmap/inputdata.tsv
        && cd /srv/shiny-server/samples/heatmap/
        && Rscript ./app.R 
    ]]>
    </command>
    <inputs>
        <param name="infile" type="data" format="tsv" label="A tsv dataMatrix file"/>
    </inputs>
    <outputs>
        <data name="file_output" format="txt" />
    </outputs>
    <tests>
    </tests>
    <help>
<![CDATA[
]]>
    </help>
    <citations>
       <citation type="bibtex">
       @misc{
            author       = {Romain Dallet - romain.dallet@sb-roscoff.fr },
            title        = {{Heatmap - A tool to visualise and manipulate dataMatrix }},
            publisher    = {},
            url          = {https://quay.io/repository/workflow4metabolomics/gie-shiny-chromato}
        }
    }</citation>
    </citations>
</tool>