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docs_html/AGN.html

@@ -93,7 +93,7 @@ <h1>The AGN Model in Nyx<a class="headerlink" href="#the-agn-model-in-nyx" title
 <p>In the AGN model, super-massive black hole (SMBH) particles are formed
 at <em>haloes</em>, where each halo is defined by a connected mass enclosed by
 a user-defined density isocontour. In order to find haloes, we use the
-Reeber package described in Section&nbsp;<a class="reference external" href="#sec:Reeber">2</a>. Each AGN
+Reeber package described in Section&nbsp;2. Each AGN
 particle has the standard dark matter particle attributes of position,
 velocity, and mass, as well as two additional attributes, its stored
 accretion energy and its mass accretion rate.</p>
@@ -192,7 +192,7 @@ <h2>Merging AGN Particles<a class="headerlink" href="#merging-agn-particles" tit
 pair, and <span class="math notranslate nohighlight">\(G\)</span> is the gravitational constant.</p>
 </li>
 </ol>
-<p>Criterion&nbsp;<a class="reference external" href="#velocity-item">[velocity-item]</a> above is necessary in
+<p>Criterion&nbsp;[velocity-item] above is necessary in
 order to prevent AGN particles from merging during a fly-through
 encounter of two haloes, as this could lead to AGN particles being
 quickly removed from the host halo due to momentum conservation.</p>

docs_html/NyxForcing.html

@@ -102,7 +102,7 @@ <h1>Stochastic Forcing<a class="headerlink" href="#stochastic-forcing" title="Pe
 </div>
 <p>must be set in the inputs file.</p>
 <p>The external forcing term in the momentum equation
-(<a class="reference external" href="#eq:momt">[eq:momt]</a>) is then given by</p>
+([eq:momt]) is then given by</p>
 <blockquote>
 <div><div class="math notranslate nohighlight">
 \[{\bf S}_{\rho \Ub} = \rho_b \mathbf{f}\]</div>
@@ -125,7 +125,7 @@ <h1>Stochastic Forcing<a class="headerlink" href="#stochastic-forcing" title="Pe
 <p>To maintain a nearly constant root-mean-square Mach number, a simple
 model for radiative heating and cooling around a given equilibrium
 temperature <span class="math notranslate nohighlight">\(T_0\)</span> is applied in the energy
-equation&nbsp;(<a class="reference external" href="#eq:energy">[eq:energy]</a>):</p>
+equation&nbsp;([eq:energy]):</p>
 <div class="math notranslate nohighlight">
 \[S_{\rho E} = S_{\rho e} + \Ub \cdot {\bf S}_{\rho \Ub} = -\frac{\alpha k_{\rm B}(T-T_0)}{\mu m_{\rm H}(\gamma-1)} + \rho_b\Ub\cdot\mathbf{f}\]</div>
 <p>The parameters <span class="math notranslate nohighlight">\(T_0\)</span> and <span class="math notranslate nohighlight">\(\alpha\)</span> correspond to temp0 and

docs_html/NyxInputs.html

@@ -434,7 +434,7 @@ <h2>Regridding<a class="headerlink" href="#regridding" title="Permalink to this
 <div class="section" id="overview">
 <h3>Overview<a class="headerlink" href="#overview" title="Permalink to this headline">¶</a></h3>
 <p>The details of the regridding strategy are described in Section
-<a class="reference external" href="#subsec:grid-generation">5.5</a>, but first we cover how the input
+5.5, but first we cover how the input
 parameters can control the gridding.</p>
 <p>As described later, the user defines Fortran subroutines which tag
 individual cells at a given level if they need refinement. This list of

docs_html/_static/nbsphinx-code-cells.css

@@ -62,12 +62,16 @@ div.nblast.container {
 }
 
 /* input prompt */
-div.nbinput.container div.prompt pre {
+div.nbinput.container div.prompt pre,
+/* for sphinx_immaterial theme: */
+div.nbinput.container div.prompt pre > code {
     color: #307FC1;
 }
 
 /* output prompt */
-div.nboutput.container div.prompt pre {
+div.nboutput.container div.prompt pre,
+/* for sphinx_immaterial theme: */
+div.nboutput.container div.prompt pre > code {
     color: #BF5B3D;
 }
 
@@ -204,8 +208,10 @@ div.nboutput.container div.output_area > div[class^='highlight']{
     overflow-y: hidden;
 }
 
-/* hide copybtn icon on prompts (needed for 'sphinx_copybutton') */
-.prompt .copybtn {
+/* hide copy button on prompts for 'sphinx_copybutton' extension ... */
+.prompt .copybtn,
+/* ... and 'sphinx_immaterial' theme */
+.prompt .md-clipboard.md-icon {
     display: none;
 }