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added storing dictionary in break dyanamic alignment with CT #751

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added storing dictionary in break dyanamic alignment with CT

added storing dictionary in break dyanamic alignment with CT #751

Triggered via push January 9, 2024 00:42
@pjmarkpjmark
pushed e46b35b
centiloid
Status Failure
Total duration 1d 11h 0m 53s
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test.yml

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Matrix: cuda
Matrix: test
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311 errors
[TODO] amypet/centiloid.py#L69: amypet/centiloid.py#L69
# TODO: voxel-wise kinetic analysis
[TODO] amypet/dyn_tools.py#L222: amypet/dyn_tools.py#L222
# >>> TODO: check what or if none weights to use here:
[TODO] amypet/dyn_tools.py#L304: amypet/dyn_tools.py#L304
# >>> TODO: check this k2p what to use by default
[TODO] amypet/dyn_tools.py#L326: amypet/dyn_tools.py#L326
# > TODO: get the threshold based on smoothed image
[flake8] amypet/__init__.py#L15: amypet/__init__.py#L15
F403 'from .align_brkdyn_ct import *' used; unable to detect undefined names
[flake8] amypet/__init__.py#L15: amypet/__init__.py#L15
F401 '.align_brkdyn_ct.*' imported but unused
[flake8] amypet/_backend_web.py#L45: amypet/_backend_web.py#L45
E221 multiple spaces before operator
[flake8] amypet/_backend_web.py#L170: amypet/_backend_web.py#L170
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[flake8] amypet/align.py#L18: amypet/align.py#L18
F401 '.utils.get_atlas' imported but unused
[flake8] amypet/align.py#L129: amypet/align.py#L129
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[flake8] amypet/align.py#L139: amypet/align.py#L139
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[flake8] amypet/align.py#L144: amypet/align.py#L144
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[flake8] amypet/align.py#L146: amypet/align.py#L146
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[flake8] amypet/align.py#L664: amypet/align.py#L664
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[flake8] amypet/align.py#L753: amypet/align.py#L753
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[flake8] amypet/align.py#L771: amypet/align.py#L771
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[flake8] amypet/align.py#L781: amypet/align.py#L781
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[flake8] amypet/align.py#L795: amypet/align.py#L795
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[flake8] amypet/align.py#L805: amypet/align.py#L805
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[flake8] amypet/align.py#L844: amypet/align.py#L844
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[flake8] amypet/align.py#L856: amypet/align.py#L856
W291 trailing whitespace
[flake8] amypet/align.py#L889: amypet/align.py#L889
F841 local variable 'reg_thrshld' is assigned to but never used
[flake8] amypet/align.py#L900: amypet/align.py#L900
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[flake8] amypet/align_brkdyn_ct.py#L9: amypet/align_brkdyn_ct.py#L9
I001 isort found an import in the wrong position
[flake8] amypet/align_brkdyn_ct.py#L9: amypet/align_brkdyn_ct.py#L9
E401 multiple imports on one line
[flake8] amypet/align_brkdyn_ct.py#L10: amypet/align_brkdyn_ct.py#L10
I005 isort found an unexpected missing import
[flake8] amypet/align_brkdyn_ct.py#L10: amypet/align_brkdyn_ct.py#L10
I005 isort found an unexpected missing import
[flake8] amypet/align_brkdyn_ct.py#L14: amypet/align_brkdyn_ct.py#L14
I001 isort found an import in the wrong position
[flake8] amypet/align_brkdyn_ct.py#L14: amypet/align_brkdyn_ct.py#L14
F401 'spm12' imported but unused
[flake8] amypet/align_brkdyn_ct.py#L22: amypet/align_brkdyn_ct.py#L22
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[flake8] amypet/align_brkdyn_ct.py#L65: amypet/align_brkdyn_ct.py#L65
E225 missing whitespace around operator
[flake8] amypet/align_brkdyn_ct.py#L65: amypet/align_brkdyn_ct.py#L65
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[flake8] amypet/align_brkdyn_ct.py#L65: amypet/align_brkdyn_ct.py#L65
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[flake8] amypet/align_brkdyn_ct.py#L68: amypet/align_brkdyn_ct.py#L68
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[flake8] amypet/align_brkdyn_ct.py#L71: amypet/align_brkdyn_ct.py#L71
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[flake8] amypet/align_brkdyn_ct.py#L75: amypet/align_brkdyn_ct.py#L75
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[flake8] amypet/align_brkdyn_ct.py#L92: amypet/align_brkdyn_ct.py#L92
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[flake8] amypet/align_brkdyn_ct.py#L100: amypet/align_brkdyn_ct.py#L100
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[flake8] amypet/align_brkdyn_ct.py#L160: amypet/align_brkdyn_ct.py#L160
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[flake8] amypet/align_brkdyn_ct.py#L165: amypet/align_brkdyn_ct.py#L165
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[flake8] amypet/align_brkdyn_ct.py#L165: amypet/align_brkdyn_ct.py#L165
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F811 redefinition of unused 'pickle' from line 21
[flake8] amypet/backend_centiloid.py#L37: amypet/backend_centiloid.py#L37
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[flake8] amypet/backend_centiloid.py#L38: amypet/backend_centiloid.py#L38
F401 'dipy.data.fetcher.read_mni_template' imported but unused
[flake8] amypet/backend_centiloid.py#L38: amypet/backend_centiloid.py#L38
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[flake8] amypet/backend_centiloid.py#L39: amypet/backend_centiloid.py#L39
F401 'dipy.io.image.load_nifti' imported but unused
[flake8] amypet/backend_centiloid.py#L39: amypet/backend_centiloid.py#L39
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[flake8] amypet/backend_centiloid.py#L40: amypet/backend_centiloid.py#L40
F401 'dipy.align.imwarp.SymmetricDiffeomorphicRegistration' imported but unused
[flake8] amypet/backend_centiloid.py#L40: amypet/backend_centiloid.py#L40
E402 module level import not at top of file
[flake8] amypet/backend_centiloid.py#L41: amypet/backend_centiloid.py#L41
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[flake8] amypet/backend_centiloid.py#L41: amypet/backend_centiloid.py#L41
F401 'dipy.align.metrics.CCMetric' imported but unused
[flake8] amypet/backend_centiloid.py#L41: amypet/backend_centiloid.py#L41
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F401 'dipy.align._public as align' imported but unused
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F401 'nibabel as nib' imported but unused
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F841 local variable 'dimkm' is assigned to but never used
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[flake8] amypet/dyn_tools.py#L26: amypet/dyn_tools.py#L26
E265 block comment should start with '# '
[flake8] amypet/dyn_tools.py#L55: amypet/dyn_tools.py#L55
E303 too many blank lines (2)
[flake8] amypet/dyn_tools.py#L55: amypet/dyn_tools.py#L55
C408 Unnecessary dict call - rewrite as a literal.
[flake8] amypet/dyn_tools.py#L62: amypet/dyn_tools.py#L62
E265 block comment should start with '# '
[flake8] amypet/dyn_tools.py#L65: amypet/dyn_tools.py#L65
E265 block comment should start with '# '
[flake8] amypet/dyn_tools.py#L74: amypet/dyn_tools.py#L74
E225 missing whitespace around operator
[flake8] amypet/dyn_tools.py#L90: amypet/dyn_tools.py#L90
E201 whitespace after '('
[flake8] amypet/dyn_tools.py#L90: amypet/dyn_tools.py#L90
E202 whitespace before ')'
[flake8] amypet/dyn_tools.py#L102: amypet/dyn_tools.py#L102
E225 missing whitespace around operator
[flake8] amypet/dyn_tools.py#L102: amypet/dyn_tools.py#L102
E225 missing whitespace around operator
[flake8] amypet/dyn_tools.py#L104: amypet/dyn_tools.py#L104
E225 missing whitespace around operator
[flake8] amypet/dyn_tools.py#L105: amypet/dyn_tools.py#L105
W291 trailing whitespace
[flake8] amypet/dyn_tools.py#L114: amypet/dyn_tools.py#L114
E231 missing whitespace after ','
[flake8] amypet/dyn_tools.py#L114: amypet/dyn_tools.py#L114
E231 missing whitespace after ','
[flake8] amypet/dyn_tools.py#L121: amypet/dyn_tools.py#L121
C408 Unnecessary dict call - rewrite as a literal.
[flake8] amypet/dyn_tools.py#L121: amypet/dyn_tools.py#L121
W291 trailing whitespace
[flake8] amypet/dyn_tools.py#L122: amypet/dyn_tools.py#L122
E265 block comment should start with '# '
[flake8] amypet/dyn_tools.py#L124: amypet/dyn_tools.py#L124
E265 block comment should start with '# '
[flake8] amypet/dyn_tools.py#L125: amypet/dyn_tools.py#L125
E302 expected 2 blank lines, found 1
[flake8] amypet/dyn_tools.py#L129: amypet/dyn_tools.py#L129
E225 missing whitespace around operator
[flake8] amypet/dyn_tools.py#L129: amypet/dyn_tools.py#L129
E225 missing whitespace around operator
[flake8] amypet/dyn_tools.py#L137: amypet/dyn_tools.py#L137
W293 blank line contains whitespace
[flake8] amypet/dyn_tools.py#L138: amypet/dyn_tools.py#L138
E225 missing whitespace around operator
[flake8] amypet/dyn_tools.py#L142: amypet/dyn_tools.py#L142
E201 whitespace after '('
[flake8] amypet/dyn_tools.py#L142: amypet/dyn_tools.py#L142
E202 whitespace before ')'
[flake8] amypet/dyn_tools.py#L148: amypet/dyn_tools.py#L148
E231 missing whitespace after ','
[flake8] amypet/dyn_tools.py#L148: amypet/dyn_tools.py#L148
E231 missing whitespace after ','
[flake8] amypet/dyn_tools.py#L149: amypet/dyn_tools.py#L149
E231 missing whitespace after ','
[flake8] amypet/dyn_tools.py#L155: amypet/dyn_tools.py#L155
C408 Unnecessary dict call - rewrite as a literal.
[flake8] amypet/dyn_tools.py#L156: amypet/dyn_tools.py#L156
E265 block comment should start with '# '
[flake8] amypet/dyn_tools.py#L162: amypet/dyn_tools.py#L162
E303 too many blank lines (5)
[flake8] amypet/dyn_tools.py#L163: amypet/dyn_tools.py#L163
E302 expected 2 blank lines, found 5
[flake8] amypet/dyn_tools.py#L248: amypet/dyn_tools.py#L248
E231 missing whitespace after ':'
[flake8] amypet/dyn_tools.py#L248: amypet/dyn_tools.py#L248
E702 multiple statements on one line (semicolon)
[flake8] amypet/dyn_tools.py#L248: amypet/dyn_tools.py#L248
E231 missing whitespace after ':'
[flake8] amypet/dyn_tools.py#L248: amypet/dyn_tools.py#L248
E702 multiple statements on one line (semicolon)
[flake8] amypet/dyn_tools.py#L248: amypet/dyn_tools.py#L248
E231 missing whitespace after ':'
[flake8] amypet/preproc.py#L109: amypet/preproc.py#L109
W291 trailing whitespace
[flake8] amypet/preproc.py#L155: amypet/preproc.py#L155
E501 line too long (117 > 99 characters)
[flake8] amypet/preproc.py#L267: amypet/preproc.py#L267
F841 local variable 'ur_twindow' is assigned to but never used
[flake8] amypet/preproc.py#L280: amypet/preproc.py#L280
F841 local variable 'margin' is assigned to but never used
[flake8] amypet/preproc.py#L297: amypet/preproc.py#L297
C416 Unnecessary list comprehension - rewrite using list().
[flake8] amypet/preproc.py#L299: amypet/preproc.py#L299
E501 line too long (106 > 99 characters)
[flake8] amypet/preproc.py#L327: amypet/preproc.py#L327
E225 missing whitespace around operator
[flake8] amypet/preproc.py#L333: amypet/preproc.py#L333
N400: Found backslash that is used for line breaking
[flake8] amypet/preproc.py#L333: amypet/preproc.py#L333
E502 the backslash is redundant between brackets
[flake8] amypet/preproc.py#L334: amypet/preproc.py#L334
N400: Found backslash that is used for line breaking
[flake8] amypet/preproc.py#L334: amypet/preproc.py#L334
E225 missing whitespace around operator
[flake8] amypet/preproc.py#L334: amypet/preproc.py#L334
E502 the backslash is redundant between brackets
[flake8] amypet/preproc.py#L339: amypet/preproc.py#L339
E128 continuation line under-indented for visual indent
[flake8] amypet/preproc.py#L343: amypet/preproc.py#L343
E128 continuation line under-indented for visual indent
[flake8] amypet/preproc.py#L371: amypet/preproc.py#L371
E225 missing whitespace around operator
[flake8] amypet/preproc.py#L375: amypet/preproc.py#L375
E128 continuation line under-indented for visual indent
[flake8] amypet/preproc.py#L376: amypet/preproc.py#L376
W293 blank line contains whitespace
[flake8] amypet/preproc.py#L377: amypet/preproc.py#L377
E225 missing whitespace around operator
[flake8] amypet/preproc.py#L381: amypet/preproc.py#L381
E128 continuation line under-indented for visual indent
[flake8] amypet/preproc.py#L417: amypet/preproc.py#L417
W293 blank line contains whitespace
[flake8] amypet/preproc.py#L479: amypet/preproc.py#L479
E501 line too long (111 > 99 characters)
[flake8] amypet/preproc.py#L479: amypet/preproc.py#L479
E231 missing whitespace after ':'
[flake8] amypet/preproc.py#L527: amypet/preproc.py#L527
F841 local variable '_fnii' is assigned to but never used
[flake8] amypet/preproc.py#L725: amypet/preproc.py#L725
F841 local variable 'ft1pet' is assigned to but never used
[flake8] amypet/proc.py#L23: amypet/proc.py#L23
E265 block comment should start with '# '
[flake8] amypet/proc.py#L39: amypet/proc.py#L39
E128 continuation line under-indented for visual indent
[flake8] amypet/proc.py#L51: amypet/proc.py#L51
E128 continuation line under-indented for visual indent
[flake8] amypet/proc.py#L52: amypet/proc.py#L52
E265 block comment should start with '# '
[flake8] amypet/proc.py#L87: amypet/proc.py#L87
W291 trailing whitespace
[flake8] amypet/proc.py#L258: amypet/proc.py#L258
E225 missing whitespace around operator
[flake8] amypet/proc.py#L305: amypet/proc.py#L305
W291 trailing whitespace
[flake8] amypet/proc.py#L356: amypet/proc.py#L356
E262 inline comment should start with '# '
[flake8] amypet/proc.py#L357: amypet/proc.py#L357
W291 trailing whitespace
[flake8] amypet/proc.py#L359: amypet/proc.py#L359
E225 missing whitespace around operator
[flake8] amypet/proc.py#L361: amypet/proc.py#L361
E225 missing whitespace around operator
[flake8] amypet/proc.py#L369: amypet/proc.py#L369
W293 blank line contains whitespace
[flake8] amypet/proc.py#L370: amypet/proc.py#L370
E303 too many blank lines (2)
[flake8] amypet/ur_tools.py#L169: amypet/ur_tools.py#L169
E501 line too long (107 > 99 characters)
[flake8] amypet/ur_tools.py#L170: amypet/ur_tools.py#L170
E501 line too long (106 > 99 characters)
[flake8] amypet/ur_tools.py#L277: amypet/ur_tools.py#L277
F841 local variable 'flbl_pet' is assigned to but never used
[flake8] amypet/ur_tools.py#L302: amypet/ur_tools.py#L302
E128 continuation line under-indented for visual indent
[flake8] amypet/ur_tools.py#L303: amypet/ur_tools.py#L303
E128 continuation line under-indented for visual indent
[flake8] amypet/ur_tools.py#L332: amypet/ur_tools.py#L332
E231 missing whitespace after ':'
[flake8] amypet/ur_tools.py#L332: amypet/ur_tools.py#L332
E702 multiple statements on one line (semicolon)
[flake8] amypet/utils.py#L14: amypet/utils.py#L14
I001 isort found an import in the wrong position
[flake8] amypet/utils.py#L70: amypet/utils.py#L70
E265 block comment should start with '# '
[flake8] amypet/utils.py#L74: amypet/utils.py#L74
E225 missing whitespace around operator
[flake8] amypet/utils.py#L194: amypet/utils.py#L194
E231 missing whitespace after ':'
[flake8] amypet/utils.py#L194: amypet/utils.py#L194
E501 line too long (115 > 99 characters)
[flake8] amypet/utils.py#L196: amypet/utils.py#L196
E265 block comment should start with '# '
[flake8] amypet/utils.py#L215: amypet/utils.py#L215
E265 block comment should start with '# '
[flake8] amypet/utils.py#L239: amypet/utils.py#L239
E265 block comment should start with '# '
[flake8] amypet/utils.py#L260: amypet/utils.py#L260
E231 missing whitespace after ':'
[flake8] amypet/utils.py#L266: amypet/utils.py#L266
E303 too many blank lines (2)
[flake8] amypet/utils.py#L276: amypet/utils.py#L276
E203 whitespace before ':'
[flake8] amypet/utils.py#L425: amypet/utils.py#L425
E231 missing whitespace after ':'
[flake8] amypet/utils.py#L425: amypet/utils.py#L425
E231 missing whitespace after ','
[flake8] amypet/utils.py#L426: amypet/utils.py#L426
E231 missing whitespace after ':'
[flake8] amypet/utils.py#L426: amypet/utils.py#L426
E231 missing whitespace after ':'
[flake8] amypet/utils.py#L437: amypet/utils.py#L437
E231 missing whitespace after ':'
[flake8] amypet/utils.py#L437: amypet/utils.py#L437
E231 missing whitespace after ':'
[flake8] amypet/utils.py#L437: amypet/utils.py#L437
E231 missing whitespace after ':'
[flake8] amypet/utils.py#L481: amypet/utils.py#L481
E231 missing whitespace after ':'
[flake8] amypet/utils.py#L481: amypet/utils.py#L481
E231 missing whitespace after ':'
[flake8] amypet/utils.py#L496: amypet/utils.py#L496
E231 missing whitespace after ':'
Test py3.7
Process completed with exit code 1.
[flake8] amypet/utils.py#L496: amypet/utils.py#L496
E231 missing whitespace after ':'
[flake8] amypet/utils.py#L525: amypet/utils.py#L525
E231 missing whitespace after ':'
[flake8] amypet/utils.py#L525: amypet/utils.py#L525
E231 missing whitespace after ':'
[flake8] amypet/utils.py#L526: amypet/utils.py#L526
E231 missing whitespace after ':'
[flake8] amypet/utils.py#L602: amypet/utils.py#L602
E231 missing whitespace after ':'
[flake8] amypet/utils.py#L602: amypet/utils.py#L602
E231 missing whitespace after ','
[flake8] amypet/utils.py#L603: amypet/utils.py#L603
E231 missing whitespace after ':'
[flake8] amypet/utils.py#L603: amypet/utils.py#L603
E231 missing whitespace after ':'
[flake8] amypet/utils.py#L639: amypet/utils.py#L639
E231 missing whitespace after ':'
[flake8] amypet/utils.py#L639: amypet/utils.py#L639
E231 missing whitespace after ':'
[flake8] amypet/utils.py#L641: amypet/utils.py#L641
E231 missing whitespace after ':'
[flake8] amypet/utils.py#L662: amypet/utils.py#L662
E231 missing whitespace after ':'
[flake8] amypet/utils.py#L662: amypet/utils.py#L662
E231 missing whitespace after ':'
[flake8] amypet/utils.py#L664: amypet/utils.py#L664
E231 missing whitespace after ':'
[flake8] cl_scripts/amypet_petpp.py#L13: cl_scripts/amypet_petpp.py#L13
E265 block comment should start with '# '
[flake8] cl_scripts/amypet_petpp.py#L15: cl_scripts/amypet_petpp.py#L15
E265 block comment should start with '# '
[flake8] cl_scripts/amypet_petpp.py#L20: cl_scripts/amypet_petpp.py#L20
E265 block comment should start with '# '
[flake8] cl_scripts/amypet_petpp.py#L26: cl_scripts/amypet_petpp.py#L26
E265 block comment should start with '# '
[flake8] cl_scripts/amypet_petpp.py#L30: cl_scripts/amypet_petpp.py#L30
E265 block comment should start with '# '
[flake8] cl_scripts/amypet_petpp.py#L32: cl_scripts/amypet_petpp.py#L32
E265 block comment should start with '# '
[flake8] cl_scripts/amypet_petpp.py#L34: cl_scripts/amypet_petpp.py#L34
E265 block comment should start with '# '
[flake8] cl_scripts/amypet_petpp.py#L45: cl_scripts/amypet_petpp.py#L45
E265 block comment should start with '# '
[flake8] cl_scripts/amypet_petpp.py#L47: cl_scripts/amypet_petpp.py#L47
E265 block comment should start with '# '
[flake8] cl_scripts/amypet_petpp.py#L49: cl_scripts/amypet_petpp.py#L49
E265 block comment should start with '# '
[flake8] cl_scripts/amypet_petpp.py#L52: cl_scripts/amypet_petpp.py#L52
E265 block comment should start with '# '
[flake8] cl_scripts/centi_fbp.py#L104: cl_scripts/centi_fbp.py#L104
E501 line too long (134 > 99 characters)
[flake8] cl_scripts/centi_fbp.py#L197: cl_scripts/centi_fbp.py#L197
E402 module level import not at top of file
[flake8] cl_scripts/centi_fbp.py#L198: cl_scripts/centi_fbp.py#L198
E402 module level import not at top of file
[flake8] cl_scripts/centi_fbp.py#L224: cl_scripts/centi_fbp.py#L224
W292 no newline at end of file
[flake8] cl_scripts/centi_pib.py#L140: cl_scripts/centi_pib.py#L140
E231 missing whitespace after ':'
[flake8] cl_scripts/centi_pib.py#L169: cl_scripts/centi_pib.py#L169
E231 missing whitespace after ':'
[flake8] cl_scripts/centi_pib.py#L198: cl_scripts/centi_pib.py#L198
E231 missing whitespace after ':'
[flake8] tests/conftest.py#L36: tests/conftest.py#L36
E231 missing whitespace after ':'
[flake8] tests/conftest.py#L46: tests/conftest.py#L46
E231 missing whitespace after ':'
Test py3.11
The job was canceled because "_3_7" failed.
Test py3.11
The operation was canceled.
Check
Process completed with exit code 1.
CUDA py3.8
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.