TotalRNA-Snakemake v1.1.0

Features

• add diamond support and Silva138 (#13) (4272233)
• mark some files as temporaru (99bcb6f)

Bug Fixes

• broken import (b2e03d7)
• don't remove legacy dir (3e5121c)
• keep temporary files after metarib (23305ec)
• typo path (12b0e69)
• unexpected exit (631453a)
• warning for manual corrrection (#15) (3afdcf2)

v1.1.1

Fixed this issue:
trinityrnaseq/trinityrnaseq#1255

v1.1.0

This release is a minimal functional version of our pipeline for large-scale TotalRNA metatranscriptomic.

It has been developed, based on the work of many others, by @currocam with the help of @biozervas .

TotalRNA-Snakemake v1.0.0

Features

• Trim reads using trim-galore.
• Filtering SSU and LSU reads using sormerna and SILVA.
• Reconstructing ribosomal genes using Metarib.
• Checking the quality of the ribosomal assembly using QUAST.
• Mapping RNA contigs to reads using CoMW.
• Classifying reads taxonomically using BLAST, SILVA and CREST.
• Assembling non-rRNA reads, filtering noncoding RNA, mapping mRNA reads to contigs and aligning contigs to SWORD using CoMW.