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@AuReMe

AuReMe

AUtomated REconstruction of MEtabolic models

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  1. metage2metabo metage2metabo Public

    From annotated genomes to metabolic screening in large scale microbiotas

    Jupyter Notebook 50 7

  2. mpwt mpwt Public

    Pathway Tools multiprocessing wrapper (for PathoLogic).

    Python 14

  3. emapper2gbk emapper2gbk Public

    Forked from ArnaudBelcour/gff_to_gbk

    Convert GFF, fastas, annotation table and species name into Genbank.

    Python 12 5

  4. padmet padmet Public

    Python library for hAndling metaData of METabolism.

    Python 4 2

  5. aucome aucome Public

    Automatic Comparison of Metabolism

    Python 4

  6. mpwt-docker mpwt-docker Public

    A dockerfile for multiprocessing Pathway-Tools.

    Dockerfile 2 1

Repositories

Showing 10 of 17 repositories
  • esmecata Public

    From taxonomic affiliations to annotated proteins using UniProt database.

    AuReMe/esmecata’s past year of commit activity
    Python 2 GPL-3.0 1 1 0 Updated Sep 23, 2024
  • Ontosunburst Public Forked from PaulineGHG/Ontology_sunburst

    Sunburst representation of ontologies

    AuReMe/Ontosunburst’s past year of commit activity
    Python 1 GPL-3.0 1 0 0 Updated Aug 29, 2024
  • metage2metabo Public

    From annotated genomes to metabolic screening in large scale microbiotas

    AuReMe/metage2metabo’s past year of commit activity
    Jupyter Notebook 50 LGPL-3.0 7 7 0 Updated Aug 23, 2024
  • padmet Public

    Python library for hAndling metaData of METabolism.

    AuReMe/padmet’s past year of commit activity
    Python 4 GPL-3.0 2 4 0 Updated Aug 5, 2024
  • prolipipe Public Forked from ytirlet/prolific

    The prolific pipeline is about genome annotation and metabolic pathway reconstruction. From .fasta genomes, it enables to find if strains of bacteria are theorically able to produce metabolites

    AuReMe/prolipipe’s past year of commit activity
    Python 0 GPL-3.0 2 0 1 Updated Jul 24, 2024
  • aureme Public
    AuReMe/aureme’s past year of commit activity
    Python 0 GPL-3.0 0 2 0 Updated Apr 24, 2024
  • mpwt Public

    Pathway Tools multiprocessing wrapper (for PathoLogic).

    AuReMe/mpwt’s past year of commit activity
    Python 14 LGPL-3.0 0 5 0 Updated Apr 16, 2024
  • HoloInteract Public

    Study interactions hosts and microorganisms at metabolic level.

    AuReMe/HoloInteract’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Apr 3, 2024
  • emapper2gbk Public Forked from ArnaudBelcour/gff_to_gbk

    Convert GFF, fastas, annotation table and species name into Genbank.

    AuReMe/emapper2gbk’s past year of commit activity
    Python 12 LGPL-3.0 8 8 0 Updated Apr 3, 2024
  • MeneVal Public
    AuReMe/MeneVal’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Apr 3, 2024

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