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BIMSB bioinformatics platform / Akalin Lab

git repositories for the Akalin lab

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  1. janggu janggu Public

    Deep learning infrastructure for genomics

    Jupyter Notebook 255 34

  2. genomation genomation Public

    R package for genomic feature analysis and visualization

    R 74 22

  3. compgen2021 compgen2021 Public

    R 73 23

  4. maui maui Public

    Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit

    Jupyter Notebook 49 21

  5. ikarus ikarus Public

    Identifying tumor cells at the single-cell level using machine learning

    HTML 45 12

  6. VoltRon VoltRon Public

    Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration

    R 43 10

Repositories

Showing 10 of 106 repositories
  • flexynesis-benchmarks Public

    Comprehensive continuous benchmarking of tools for multi-omics data integration

    BIMSBbioinfo/flexynesis-benchmarks’s past year of commit activity
    Python 1 1 2 0 Updated Dec 19, 2024
  • VoltRon Public

    Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration

    BIMSBbioinfo/VoltRon’s past year of commit activity
    R 43 10 3 0 Updated Dec 18, 2024
  • flexynesis Public

    A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner

    BIMSBbioinfo/flexynesis’s past year of commit activity
    Python 25 4 11 1 Updated Dec 17, 2024
  • ZarrDataFrame Public
    BIMSBbioinfo/ZarrDataFrame’s past year of commit activity
    R 0 MIT 1 0 0 Updated Dec 15, 2024
  • ZarrArray Public

    Zarr backend for DelayedArray objects

    BIMSBbioinfo/ZarrArray’s past year of commit activity
    R 2 1 3 0 Updated Dec 15, 2024
  • compgen Public
    BIMSBbioinfo/compgen’s past year of commit activity
    0 1 0 0 Updated Dec 9, 2024
  • tibanna-bimsb Public Forked from 4dn-dcic/tibanna

    Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

    BIMSBbioinfo/tibanna-bimsb’s past year of commit activity
    Python 0 MIT 28 0 0 Updated Dec 5, 2024
  • anglemania Public

    Repository for the "Neuroblastoma" project, colloquailly known as anglemana; source material for a package under the same name

    BIMSBbioinfo/anglemania’s past year of commit activity
    R 0 Artistic-2.0 0 18 0 Updated Dec 3, 2024
  • ImageArray Public
    BIMSBbioinfo/ImageArray’s past year of commit activity
    R 0 1 0 0 Updated Nov 24, 2024
  • pigx_scrnaseq Public

    Pipeline for analysis of Dropseq single cell data

    BIMSBbioinfo/pigx_scrnaseq’s past year of commit activity
    Python 10 6 28 0 Updated Nov 14, 2024

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