v2.1.0

This version includes some bug fixes, changes the naming scheme of subcontigs, adds unit testing, and adds the src and tests directories.

v2.0.0

This release introduces weighted percentile FUKMs (with number of unique k-mers as the weight) as an improved measure of strain abundances. In addition, hashcounter has been rewritten from python to C for major gains in speed and memory usage, making StrainR2 more accessible for use on personal computers.

v1.0.1

1.0.1 introduces various bug fixes to make StrainR2 less likely to throw an error on some inputs.

StrainR2v1.0.0

Initial Release