v0.1.1

Installation

Mac

Mac installation has been tested on Monterey only. If using other versions of macOS and you find issues, please install from the R package from source or use the web app.

1. Download CRUX-v0.1.1-mac.dmg
2. Open CRUX-v0.1.1-mac.dmg and drag CRUX.app to applications folder to install
3. Eject CRUX-v0.1.1-mac.dmg
4. Run CRUX.app as you would any other MacOS application

Windows

1. Download CRUX-v0.1.1-windows.zip
2. Unzip and Run CRUX.bat

What's Changed

Key update is the License (now GLP3)

• Dev by @selkamand in #1
• Streamdata by @selkamand in #16
• Shinyapps deployment by @selkamand in #19
• 18 switch shinyfiles to shinyfileinput by @selkamand in #28
• 29 simplify gistic import by @selkamand in #33
• 34 mutational signatures replace shinyfiles with fileinput by @selkamand in #43
• 22 make dataset default choose your dataset by @selkamand in #57
• fix: made visualisations the first thing you see in cohort summary by @selkamand in #60
• fix: bslib warning fixed by moving br() out of tabsetPanel call by @selkamand in #62
• fix: R.utils added in imports, allowing TMB and drug-gene interaction… by @selkamand in #64
• fix: added mclust to suggests so tumor heterogeneity analysis works o… by @selkamand in #66
• fix: converted err to character before running stringr::detect by @selkamand in #67
• 20 reduce dependencies by @selkamand in #71
• feat: added button linking available datasets to single cohort analysis by @selkamand in #72
• fix: added high-level pathway analysis module back in by @selkamand in #73
• fix: assorted tweaks to get devtools::check working by @selkamand in #75
• fix: streamlined readme by @selkamand in #77
• added r-universe badge and missing assertion remote to description (p… by @selkamand in #82
• fix: DNAcopy repo by @selkamand in #86
• fix: added zlibbioc to desc for R universe compatibility by @selkamand in #87
• fix: removed unnecesary deps by @selkamand in #88
• fix: improved installation instructions by @selkamand in #89
• fix: documentation and data by @selkamand in #93