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@CacconeLabYale

The Caccone Lab at Yale

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  1. snakemake-pipelines snakemake-pipelines Public

    snakemake-implemented version of Andrea's analysis pipeline

    HTML 1 1

  2. tsetseDB tsetseDB Public

    Code associated with the creation and maintenance of the sample database for our tsetse fly population genomics project

    Python

  3. TsetseCheckout TsetseCheckout Public

    A system for users to request sample tubes from the Aksoy/Caccone Labs' tsetse fly specimen database.

    JavaScript

  4. glossina_genome_stuff glossina_genome_stuff Public

    Little things generated from necessity like chromosome name re-mappings and such that would be good to keep track of in a form that facilitates access from python etc on diff machines/hpc environments

  5. field_data field_data Public

  6. gloria_soria_ddRAD_2015 gloria_soria_ddRAD_2015 Public

    code in support of the tsetse ddRAD paper

    Python

Repositories

Showing 10 of 11 repositories
  • snakemake-pipelines Public

    snakemake-implemented version of Andrea's analysis pipeline

    CacconeLabYale/snakemake-pipelines’s past year of commit activity
    HTML 1 MIT 1 0 0 Updated Aug 1, 2017
  • gloria_soria_ddRAD_2015 Public

    code in support of the tsetse ddRAD paper

    CacconeLabYale/gloria_soria_ddRAD_2015’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 1, 2016
  • gmm-to-gff-transcripts-vs-snps Public

    Pipeline used to incorporate RNA-seq based transcriptomics information from Glossina morsitans morsitans into the Glossina fuscipes fuscipes annotation information used to characterize SNPs predicted to be significant in G. f. f.

    CacconeLabYale/gmm-to-gff-transcripts-vs-snps’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Aug 2, 2016
  • argot2-batch-data-prep Public Forked from xguse/argot2-batch-data-prep
    CacconeLabYale/argot2-batch-data-prep’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Mar 23, 2016
  • format-collection-sheets Public

    Performs basic recoding of collection sheets to yield a standardized spreadsheet format.

    CacconeLabYale/format-collection-sheets’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 3, 2016
  • field_data Public
    CacconeLabYale/field_data’s past year of commit activity
    0 0 0 0 Updated Nov 20, 2015
  • gus_analysis_code Public

    Code needed to reproduce main work done by Gus Dunn for the Caccone Lab at Yale.

    CacconeLabYale/gus_analysis_code’s past year of commit activity
    Python 0 BSD-2-Clause 0 0 0 Updated Aug 11, 2015
  • cookiecutter-pylibrary Public Forked from ionelmc/cookiecutter-pylibrary

    Enhanced cookiecutter template for Python libraries.

    CacconeLabYale/cookiecutter-pylibrary’s past year of commit activity
    Python 0 208 0 0 Updated Aug 10, 2015
  • TsetseCheckout Public

    A system for users to request sample tubes from the Aksoy/Caccone Labs' tsetse fly specimen database.

    CacconeLabYale/TsetseCheckout’s past year of commit activity
    JavaScript 0 BSD-3-Clause 0 0 0 Updated Jan 16, 2015
  • glossina_genome_stuff Public

    Little things generated from necessity like chromosome name re-mappings and such that would be good to keep track of in a form that facilitates access from python etc on diff machines/hpc environments

    CacconeLabYale/glossina_genome_stuff’s past year of commit activity
    0 MIT 0 0 0 Updated Dec 8, 2014
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