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feat: add tga cnvkit to gens #258

feat: add tga cnvkit to gens

feat: add tga cnvkit to gens #258

Triggered via pull request August 2, 2024 13:27
Status Failure
Total duration 2m 39s
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Matrix: Build and publish
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29 errors and 3 warnings
Build and publish (somalier)
buildx failed with: ERROR: failed to solve: process "/bin/sh -c cd / && git clone -b v0.2.16 --depth 1 https://github.com/brentp/somalier.git && cd somalier && nimble install -y nimble && /root/.nimble/bin/nimble install -d -y" did not complete successfully: exit code: 1
Build and publish (ascatNgs)
The job was canceled because "somalier" failed.
Build and publish (ascatNgs)
The operation was canceled.
Build and publish (purecn)
The job was canceled because "somalier" failed.
Build and publish (purecn)
The operation was canceled.
Build and publish (varcall_py3)
The job was canceled because "somalier" failed.
Build and publish (varcall_py3)
The operation was canceled.
Build and publish (delly)
The job was canceled because "somalier" failed.
Build and publish (delly)
The operation was canceled.
Build and publish (annotate)
The job was canceled because "somalier" failed.
Build and publish (annotate)
The operation was canceled.
Build and publish (align_qc)
The job was canceled because "somalier" failed.
Build and publish (align_qc)
The operation was canceled.
Build and publish (coverage_qc)
The job was canceled because "somalier" failed.
Build and publish (coverage_qc)
The operation was canceled.
Build and publish (cadd)
The job was canceled because "somalier" failed.
Build and publish (cadd)
The operation was canceled.
Build and publish (cnvpytor)
The job was canceled because "somalier" failed.
Build and publish (cnvpytor)
The operation was canceled.
Build and publish (varcall_py27)
The job was canceled because "somalier" failed.
Build and publish (varcall_py27)
The operation was canceled.
Build and publish (gatk)
The job was canceled because "somalier" failed.
Build and publish (gatk)
The operation was canceled.
Build and publish (multiqc)
The job was canceled because "somalier" failed.
Build and publish (multiqc)
The operation was canceled.
Build and publish (vcf2cytosure)
The job was canceled because "somalier" failed.
Build and publish (vcf2cytosure)
The operation was canceled.
Build and publish (cnvkit)
The job was canceled because "somalier" failed.
Build and publish (cnvkit)
The operation was canceled.
Build and publish (htslib)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3, docker/setup-qemu-action@v2, docker/setup-buildx-action@v2, docker/login-action@v2, docker/build-push-action@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Build and publish (msisensorpro)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3, docker/setup-qemu-action@v2, docker/setup-buildx-action@v2, docker/login-action@v2, docker/build-push-action@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Build and publish (somalier)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3, docker/setup-qemu-action@v2, docker/setup-buildx-action@v2, docker/login-action@v2, docker/build-push-action@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/