feat: add tga cnvkit to gens #309
Triggered via pull request
September 10, 2024 12:05
mathiasbio
Status
Failure
Total duration
2m 24s
Artifacts
–
docker_build_publish_develop.yml
on: pull_request
Matrix: Build and publish
Annotations
24 errors and 5 warnings
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Build and publish (somalier)
buildx failed with: ERROR: failed to solve: process "/bin/sh -c cd / && git clone -b v0.2.16 --depth 1 https://github.com/brentp/somalier.git && cd somalier && nimble install -y nimble && /root/.nimble/bin/nimble install -d -y" did not complete successfully: exit code: 1
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Build and publish (msisensorpro)
The job was canceled because "somalier" failed.
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Build and publish (delly)
The job was canceled because "somalier" failed.
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Build and publish (delly)
The operation was canceled.
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Build and publish (cnvkit)
The job was canceled because "somalier" failed.
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Build and publish (cnvkit)
The operation was canceled.
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Build and publish (ascatNgs)
The job was canceled because "somalier" failed.
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Build and publish (ascatNgs)
The operation was canceled.
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Build and publish (purecn)
The job was canceled because "somalier" failed.
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Build and publish (purecn)
The operation was canceled.
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Build and publish (annotate)
The job was canceled because "somalier" failed.
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Build and publish (annotate)
The operation was canceled.
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Build and publish (coverage_qc)
The job was canceled because "somalier" failed.
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Build and publish (coverage_qc)
The operation was canceled.
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Build and publish (varcall_py3)
The job was canceled because "somalier" failed.
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Build and publish (varcall_py3)
The operation was canceled.
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Build and publish (align_qc)
The job was canceled because "somalier" failed.
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Build and publish (align_qc)
The operation was canceled.
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Build and publish (varcall_py27)
The job was canceled because "somalier" failed.
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Build and publish (varcall_py27)
The operation was canceled.
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Build and publish (cadd)
The job was canceled because "somalier" failed.
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Build and publish (cadd)
The operation was canceled.
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Build and publish (cnvpytor)
The job was canceled because "somalier" failed.
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Build and publish (cnvpytor)
The operation was canceled.
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Build and publish (htslib)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, docker/setup-qemu-action@v2, docker/setup-buildx-action@v2, docker/login-action@v2, docker/build-push-action@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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Build and publish (multiqc)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, docker/setup-qemu-action@v2, docker/setup-buildx-action@v2, docker/login-action@v2, docker/build-push-action@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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Build and publish (vcf2cytosure)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, docker/setup-qemu-action@v2, docker/setup-buildx-action@v2, docker/login-action@v2, docker/build-push-action@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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Build and publish (gatk)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, docker/setup-qemu-action@v2, docker/setup-buildx-action@v2, docker/login-action@v2, docker/build-push-action@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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Build and publish (somalier)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, docker/setup-qemu-action@v2, docker/setup-buildx-action@v2, docker/login-action@v2, docker/build-push-action@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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