add rankscore familyid

Clinical-Genomics · Oct 2, 2024 · 79b084a · 79b084a
1 parent 88820b5
commit 79b084a
Showing 1 changed file with 1 addition and 2 deletions.
diff --git a/BALSAMIC/snakemake_rules/annotation/rankscore.rule b/BALSAMIC/snakemake_rules/annotation/rankscore.rule
@@ -22,8 +22,7 @@ rule genmod_score_snvs:
     ("Scoring annotated SNV variants using genmod for {params.case_name}")
   shell:
     """
-genmod score -r -c {input.rank_score} {input.vcf} | \
-
+genmod score -i {params.case_name} -r -c {input.rank_score} {input.vcf} | \
 bcftools view -o {output.vcf_clinical} -O z;
 
 tabix -p vcf -f {output.vcf_clinical};