Replace alchy with sqlservice and unfreeze SQLAlchemy#255

Merged

northwestwitch merged 30 commits intomasterfrom deprecate_alchy

May 22, 2024

+266-301

Commits on May 16, 2024

Removed Alchy and fixed store.api to work with sqlservice
Chiara Rasi
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Removed unused code
Chiara Rasi
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Creates the db on file now
Chiara Rasi
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Loads transcripts without erroers
Chiara Rasi
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Fixed also loading sample
Chiara Rasi
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Fix code
Chiara Rasi
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Fix connection
Chiara Rasi
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Fixed mean and its test
Chiara Rasi
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Fix calculate coverage and its test
Chiara Rasi
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Fixed one more test
Chiara Rasi
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Fixed another test
Chiara Rasi
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Fixed test_link test
Chiara Rasi
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Fixed test_setup_reset
Chiara Rasi
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Fixed remove and test_remove
Chiara Rasi
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Fix delete samples and test
Chiara Rasi
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Fix delete_group and its test
Chiara Rasi
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Fixed test_dialect
Chiara Rasi
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Work in progress
Chiara Rasi
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Commits on May 17, 2024

Fixed test_add_many
Chiara Rasi
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Fixed tests/test_calculate, test_mean
Chiara Rasi
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Fixed tests/test_calculate, test_mean_with_samples
Chiara Rasi
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Fixed tests/test_calculate, test_gene
Chiara Rasi
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Fixed tests/test_calculate, test_sample_coverage
Chiara Rasi
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Fixed delete and test test_delete_sample
Chiara Rasi
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Small fix in model
Chiara Rasi
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Updated changelog
Chiara Rasi
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Commits on May 20, 2024

Revert the naming of a key because then it's not found in chajo-report
Chiara Rasi
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Test something to fix chanjo-report
Chiara Rasi
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One last check to see if original model still works with chanjo-report
Chiara Rasi
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Commits on May 22, 2024

Force update the libs if they are old
Chiara Rasi
committed