Fix #76 - revert to output unannotated loci

Clinical-Genomics · Sep 26, 2024 · c17692c · c17692c
1 parent 24bc966
commit c17692c
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -7,8 +7,9 @@ This project adheres to [Semantic Versioning](http://semver.org/).
 - Use codecov badge and fix scout link on README page
 - Added a test for TRGT MCs set to `.`
 - Added CLI test for TRGT file
-- Fix codecov upload hidden artifact issue
+- Codecov upload hidden artifact issue
 - Incorrect multisample, multiallele FORMAT output
+- Write unannotated entries (not in definition file) to output (reverted to pre-0.9 behaviour)
 
 ## [0.9.1]
 ### Added

diff --git a/stranger/cli.py b/stranger/cli.py
@@ -211,4 +211,4 @@ def cli(context, vcf, family_id, repeats_file, loglevel, trgt):
                             repeat_data[annotate_repeat_key]
                         )
 
-                click.echo(get_variant_line(variant_info, header_info))
+            click.echo(get_variant_line(variant_info, header_info))