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@DIAGNijmegen

Diagnostic Image Analysis Group

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  1. neural-odes-segmentation neural-odes-segmentation Public

    Neural Ordinary Differential Equations for Semantic Segmentation of Individual Colon Glands

    Python 106 28

  2. StreamingCNN StreamingCNN Public

    To train deep convolutional neural networks, the input data and the activations need to be kept in memory. Given the limited memory available in current GPUs, this limits the maximum dimensions of …

    Jupyter Notebook 98 23

  3. pathology-whole-slide-data pathology-whole-slide-data Public

    A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.

    Python 96 27

  4. pathology-streaming-pipeline pathology-streaming-pipeline Public

    Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.

    Python 75 10

  5. pathology-hooknet pathology-hooknet Public

    Jupyter Notebook 56 11

  6. pathology-he-auto-augment pathology-he-auto-augment Public

    H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.

    Python 52 7

Repositories

Showing 10 of 160 repositories
  • dragon_submission_LLM_data_extractor Public Forked from DIAGNijmegen/dragon_submission

    Submission to the DRAGON challenge (dragon.grand-challenge.org) using LLM_data_extractor

    DIAGNijmegen/dragon_submission_LLM_data_extractor’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 2 0 0 Updated Jan 17, 2025
  • DIAGNijmegen/llm_extractinator’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Jan 17, 2025
  • rse-grand-challenge-forge Public

    Generation of challenge packs

    DIAGNijmegen/rse-grand-challenge-forge’s past year of commit activity
    Python 0 Apache-2.0 0 2 1 Updated Jan 17, 2025
  • website-content Public

    This repository stores all the content for the diag websites.

    DIAGNijmegen/website-content’s past year of commit activity
    TeX 6 MIT 75 28 (1 issue needs help) 13 Updated Jan 17, 2025
  • Literature Public

    The literature generated and cited by the group

    DIAGNijmegen/Literature’s past year of commit activity
    TeX 0 3 0 0 Updated Jan 17, 2025
  • rse-gcapi Public

    Python client for the grand-challenge.org API

    DIAGNijmegen/rse-gcapi’s past year of commit activity
    Python 2 Apache-2.0 3 7 3 Updated Jan 16, 2025
  • nnUNet-for-pathology Public Forked from MIC-DKFZ/nnUNet

    Adapted nnUNet framework with additional features to suit the requirements for pathology applications

    DIAGNijmegen/nnUNet-for-pathology’s past year of commit activity
    Python 11 Apache-2.0 1,830 0 0 Updated Jan 16, 2025
  • picai_eval Public

    Evaluation of 3D detection and diagnosis performance —geared towards prostate cancer detection in MRI.

    DIAGNijmegen/picai_eval’s past year of commit activity
    Python 21 Apache-2.0 10 0 0 Updated Jan 16, 2025
  • ai4h-course Public
    DIAGNijmegen/ai4h-course’s past year of commit activity
    0 0 0 0 Updated Jan 15, 2025
  • rse-pyswot Public

    Python implementation of JetBrains/swot

    DIAGNijmegen/rse-pyswot’s past year of commit activity
    Python 1 Apache-2.0 1 0 0 Updated Jan 14, 2025