Create multiomics_submission.md #261
Workflow file for this run
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| name: Test | |
| on: | |
| push: | |
| branches: '*' | |
| pull_request: | |
| branches: '*' | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Free up disk space | |
| uses: jlumbroso/free-disk-space@main | |
| with: | |
| tool-cache: false | |
| android: true | |
| dotnet: true | |
| haskell: true | |
| large-packages: false | |
| docker-images: true | |
| swap-storage: false | |
| - uses: actions/setup-java@v3 | |
| with: | |
| distribution: 'zulu' | |
| java-version: '17' | |
| - name: Download Shiny Proxy | |
| run: wget -O shiny-proxy/shinyproxy-2.6.1.jar https://www.shinyproxy.io/downloads/shinyproxy-2.6.1.jar | |
| - uses: actions/setup-node@v3 | |
| with: | |
| node-version: '16' | |
| - name: Install test suite dependencies | |
| working-directory: ./tests | |
| run: npm install | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Build Dockerfile | |
| uses: docker/build-push-action@v5 | |
| with: | |
| context: . | |
| file: ./docker/Dockerfile | |
| load: true | |
| push: false | |
| tags: quay.io/microbiome-informatics/emg-notebooks.dev:latest | |
| - name: Run tests | |
| working-directory: ./tests | |
| run: npm test | |
| - uses: actions/upload-artifact@v3 | |
| if: always() | |
| with: | |
| name: launching-jupyter-lab-screenshot | |
| path: | | |
| tests/launching_jl.png | |
| tests/shiny_proxy_launched.png | |
| tests/jl_launched.png | |
| - name: Login to Quay.io | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: quay.io | |
| username: ${{ secrets.QUAY_USERNAME }} | |
| password: ${{ secrets.QUAY_PASSWORD }} | |
| - id: docker-tag | |
| uses: yuya-takeyama/docker-tag-from-github-ref-action@v1 | |
| - name: Push | |
| run: | | |
| docker tag quay.io/microbiome-informatics/emg-notebooks.dev:latest quay.io/microbiome-informatics/emg-notebooks.dev:${{ steps.docker-tag.outputs.tag }} | |
| docker push quay.io/microbiome-informatics/emg-notebooks.dev:${{ steps.docker-tag.outputs.tag }} |