Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Parallelproj sim #6

Merged
merged 30 commits into from
Nov 16, 2023
Merged

Parallelproj sim #6

merged 30 commits into from
Nov 16, 2023

Conversation

gschramm
Copy link
Contributor

Changes in this pull request

  • added demo scripts for LM data generation + reconstruction using parallelproj

Testing performed

  • None

Related issues

Checklist before requesting a review

  • I have performed a self-review of my code
  • I have added docstrings/doxygen in line with the guidance in the developer guide
  • The code builds and runs on my machine

Contribution Notes

Please read and adhere to the contribution guidelines.

Please tick the following:

  • The content of this Pull Request (the Contribution) is intentionally submitted for inclusion in the ETSI software (the Work) under the terms and conditions of the Apache-2.0 License.

gschramm and others added 30 commits November 13, 2023 17:27
@gschramm
first commit
2733e5d
@gschramm
add parallelproj to env
30d4471
@gschramm
add scipy dependency and correct plot
ae4630a
@gschramm
add noise to the emission sinogram
b48ed6a
@gschramm
add noise + event generation and plot of first 3 events
a4c72d1
@gschramm
add LM recon (WIP)
ffc63f5
@fedor-goncharov
added timestamps for the list of events
f4ac538
@gschramm
correct use of resolution model
343bda8
@gschramm
Merge branch 'parallelproj_sim' of git@github.com:ETSIhackers/LMSimRe…
98946ea 
…con.git into parallelproj_sim
@gschramm
merge fedor's changes (commented our by now)
c2ae0b9
@gschramm
add TOF simulation example
5cb73d1
@Imraj-Singh
read write with yardl
9c7453c
@gschramm
Merge pull request #3 from Imraj-Singh/read_write_functions
1e422b8 
read write with yardl
@Imraj-Singh
being a good dev ;)
a65f396
@gschramm
Merge pull request #4 from Imraj-Singh/read_write_functions
23d9ae9 
being a good dev ;)
@gschramm
improve demo scripts
8774b46
@gschramm
clean up
c09e513
@gschramm
clean up of PRD writer + support for TOF and energy IDS
d2f9729
@gschramm
continue to clean up reader
854532e
@gschramm
make prd reader python array api agnostic
8522e8e
@gschramm
rename io module
7b15e92
@gschramm
make read / recon example array api agnostic
7755231
@gschramm
update environment.yml to have pytorch and array-api-compat
3ecc19d
@gschramm
correct import of prd module
d3282af
@gschramm
clean up
6dda15c
@gschramm
bugfixes to get demo write array backend agnostic
9103272
@gschramm
pass scanner_information as input to writer
39d8d52
@gschramm
add TOF data simulationa and reconstruction
ff89fb6
@gschramm
remove hard-coded voxel sizes / origin / shape in recon script
e3269c4
@gschramm
rename demo script
9b1862f
@gschramm gschramm merged commit 72bbf60 into main Nov 16, 2023
1 check passed
@gschramm gschramm deleted the parallelproj_sim branch November 16, 2023 16:18
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers
No reviews
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.
3 participants
@gschramm @fedor-goncharov @Imraj-Singh