Update Actions #539
Workflow file for this run
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| # Workflow derived from https://github.com/r-lib/actions/tree/master/examples | |
| on: | |
| push: | |
| branches: main | |
| pull_request: | |
| branches: main | |
| workflow_dispatch: | |
| name: test-coverage | |
| jobs: | |
| test-coverage: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: | | |
| covr | |
| pkgdown | |
| remotes | |
| - name: Checkout FAIRDataPipeline/FAIR-CLI | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: FAIRDataPipeline/FAIR-CLI | |
| path: FAIR-CLI | |
| - name: Move FAIR-CLI | |
| run: mv FAIR-CLI ../FAIR-CLI | |
| - name: Install Poetry | |
| uses: snok/install-poetry@v1 | |
| with: | |
| virtualenvs-create: true | |
| virtualenvs-in-project: true | |
| - name: Install and initialise FAIR CLI | |
| run: | | |
| cd ../FAIR-CLI | |
| poetry install | |
| source $VENV | |
| cd '${{ github.workspace }}' | |
| fair registry install --version main | |
| fair init --ci | |
| fair registry start | |
| shell: bash | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - name: Restore R package cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: Install dependencies | |
| run: | | |
| remotes::install_deps(dependencies = TRUE) | |
| shell: Rscript {0} | |
| - name: Install package | |
| run: R CMD INSTALL . | |
| - name: init | |
| run: | | |
| rDataPipeline::fair_init( | |
| name = "Sonia Mitchell", | |
| identifier = "https://orcid.org/0000-0003-1536-2066", | |
| endpoint = "http://127.0.0.1:8000/api/") | |
| shell: Rscript {0} | |
| - name: Test coverage | |
| env: | |
| _RUN_TESTS_: true | |
| run: covr::codecov() | |
| shell: Rscript {0} |