MicrobeRX-v0.3.2

This release includes the script to preform batch predictions from MicrobeRX from bash
Links for prediction Colab updated
Link for Google Colab of predictions for 1038 drugs from DrugBank included
Minor bugs were fixed

MicrobeRX-v0.3.1

This release includes the script to preform batch predictions from MicrobeRX from bash
Links for prediction Colab updated
Link for Google Colab of predictions for 1038 drugs from DrugBank included
Minor bugs were fixed

MicrobeRX-v0.3.0

Full capabilities of MicrobeRX unlocked

This release includes the functionalities to generate reaction rules.
This release includes the functionalities to predict, analyze and visualize metabolites.
This release includes the functionalities to analyze microorganism and enzymes.
This release includes an updated database of reaction and protein ids improving significantly analyzes with OmicsIntegrator.

MicrobeRX-v0.2.7

Full capabilities of MicrobeRX unlocked

This release includes the functionalities to generate reaction rules.
This release includes the functionalities to predict, analyze and visualize metabolites.
This release includes the functionalities to analyze microorganism and enzymes.
This release includes an updated database of reaction and protein ids improving significantly analyzes with OmicsIntegrator

MicrobeRX-v0.2.6

Full capabilities of MicrobeRX unlocked

• This release includes the functionalities to generate reaction rules.
• This release includes the functionalities to predict, analyze and visualize metabolites.
• This release includes the functionalities to analyze microorganism and enzymes.

MicrobeRX-v0.2.5

In this version

Full capabilities of MicrobeRX unlocked

• This release includes the functionalities to generate reaction rules.
• This release includes the functionalities to predict, analyze and visualize metabolites.
• This release includes the functionalities to analyze microorganism and enzymes.

What's Changed

• ADMETox capabilities added, Sequence remapping and OmicsIntegrator finalized by @AngelRuizMoreno

Full Changelog: 0.2.2...0.2.5

MicrobeRX-v0.2.1

Documentation added to OmicsIntegrator

MicrobeRX-v0.2.0

Known bugs corrected:

• Confidence Score plot now shows data points
• Classification of molecules now classify all compounds

MicrobeRX-v0.1.3-beta.1

MicrobeRX is A tool for enzymatic reaction-based metabolite prediction in the gut microbiome.

This release includes the functionalities to generate reaction rules
This release includes the functionalities to predict, analyze and visualize metabolites.
This release NOT includes yet the functionalities to find microorganism and enzymes. Sorry!

MicrobeRX now works with pandas >=2
The PIP package has been updated to this version