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GeneDx

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  1. pgr-tk pgr-tk Public

    PGR-TK: Pangenome Research Tool Kit

    Rust 95 13

  2. phenopy phenopy Public

    Phenotype comparison tools using semantic similarity.

    Python 60 10

  3. scramble scramble Public

    R 36 12

  4. txt2hpo txt2hpo Public

    Python library for extracting HPO encoded phenotypes from text

    Python 27 4

  5. pgr-tk-notebooks pgr-tk-notebooks Public

    Jupyter Notebooks Using PGR-TK for various human pangenome analysis tasks

    Jupyter Notebook 12 4

  6. PyCap PyCap Public

    Forked from redcap-tools/PyCap

    REDCap in Python

    Python 1

Repositories

Showing 10 of 13 repositories
  • mysql-operator Public Forked from nakamasato/mysql-operator

    Manage MySQL users, databases, schemas, etc.

    GeneDx/mysql-operator’s past year of commit activity
    Go 0 5 0 1 Updated Sep 24, 2024
  • SHEPHERD Public Forked from mims-harvard/SHEPHERD

    SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases

    GeneDx/SHEPHERD’s past year of commit activity
    HTML 0 MIT 16 0 2 Updated Aug 26, 2024
  • pgr-tk Public

    PGR-TK: Pangenome Research Tool Kit

    GeneDx/pgr-tk’s past year of commit activity
    Rust 95 MIT 13 5 1 Updated Apr 22, 2024
  • txt2hpo Public

    Python library for extracting HPO encoded phenotypes from text

    GeneDx/txt2hpo’s past year of commit activity
    Python 27 4 6 (1 issue needs help) 2 Updated Apr 22, 2024
  • phenopy Public

    Phenotype comparison tools using semantic similarity.

    GeneDx/phenopy’s past year of commit activity
    Python 60 10 3 4 Updated Apr 22, 2024
  • scramble Public
    GeneDx/scramble’s past year of commit activity
    R 36 12 12 2 Updated Apr 22, 2024
  • temporalio-helm-charts Public

    GitHub Action workflow to release the Temporal.io helm charts

    GeneDx/temporalio-helm-charts’s past year of commit activity
    0 0 0 1 Updated Apr 22, 2024
  • pangolin Public Forked from invitae/pangolin

    refactoring pangolin to run splicing prediction on gnomAD v3 & v4 variants

    GeneDx/pangolin’s past year of commit activity
    Python 1 GPL-3.0 33 0 0 Updated Oct 5, 2023
  • pgr-tk-notebooks Public

    Jupyter Notebooks Using PGR-TK for various human pangenome analysis tasks

    GeneDx/pgr-tk-notebooks’s past year of commit activity
    Jupyter Notebook 12 4 0 0 Updated Mar 17, 2023
  • SpliceAI Public Forked from Illumina/SpliceAI

    A deep learning-based tool to identify splice variants

    GeneDx/SpliceAI’s past year of commit activity
    Python 1 161 0 0 Updated Dec 9, 2020
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