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ga-tools.md

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 # Tools, workflows and pipelines
 
 The following are links to Genomics Aotearoa GitHub repositories that inmplement specific 
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 - [BMSB-popgenomics](https://github.com/GenomicsAotearoa/BMSB-popgenomics) - Population genomic analysis of the brown marmorated stink bug, Halyomorpha halys for the GA Invasomics project
 - [GraphPanGenomes_Microbial](https://github.com/GenomicsAotearoa/GraphPanGenomes_Microbial) - Microbial genomics pipeline to build and analyse genome graphs
 - [vcf_annotation_pipeline](https://github.com/GenomicsAotearoa/vcf_annotation_pipeline) - A Snakemake workflow to filter, annotate and prepare variant call format (VCF) data for scout using GATK4, SnpSift, VEP and genmod. Designed to be used after human_genomics_pipeline.
-- [human_genomics_pipeline](https://github.com/GenomicsAotearoa/human_genomics_pipeline) - A Snakemake workflow to process single samples or cohorts of paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.
+- [human_genomics_pipeline](https://github.com/GenomicsAotearoa/human_genomics_pipeline) - A Snakemake workflow to process single samples or cohorts of paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.