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Rephrasing
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JSBoey committed Sep 2, 2024
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Expand Up @@ -299,7 +299,7 @@ VizBin is a general purpose tool for contig/scaffold/fragment visualisation. For
* Pull new contigs from concatenated bin files to form new bin clusters
* Check if genome metrics improve after manual refinement

For this exercise, we will be using data from the `mock_bins/` sub-directory and additional genome metrics in `mock_bins.checkm.txt`. These files were generated using a different assembly (reads assembled using MEGAHIT) based on a modified sample 3 library, and then binned using MetaBAT2 and MaxBin as per previous lessons. We also provide a set of fragmented assembled contigs for better visualisation (i.e., contig fragments with similar k-mer profiles are clustered together)!
For this exercise, we will be using data from the `mock_fragments*` files, `mock_bins/` sub-directory, and additional genome metrics in `mock_bins.checkm.txt`. These files were generated using a different assembly (reads assembled using MEGAHIT) based on a modified sample 3 library, and then binned using MetaBAT2 and MaxBin as per previous lessons.

### Inspect the genome metrics

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