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Aesthetics for ex5
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JSBoey committed Aug 31, 2023
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Expand Up @@ -266,7 +266,13 @@ By now, you should be getting familiar enough with the console to understand wha

We will now look at a few interesting assembly comparisons.

If you are working from the NeSI `Jupyter hub` environment today, the html viewer *within* the NeSI `Jupyter hub` does not currently support this (even if the browser you are running it in does). To view a basic version of the report, download the report file by navigating to the `4.evaluation/quast_results/` folder, right-click `report.html/` and select download. The downloaded file will then open within a new tab in the browser. (*NOTE: rendering the full report requires the other folders from within `quast_results/` to also be downloaded and available in the same directory as `report.html`. Unfortunately, the `Jupyter hub` environment does not appear to currently support downloading entire folders using this method.*)
!!! note "Viewing HTML in Jupyter Hub"

The NeSI Jupyter hub does not currently support viewing HTML that require Javascript (even if the browser you are running it in does). To view a basic version of the report, download the report file by navigating to the `4.evaluation/quast_results/` folder, right-click `report.html/` and select download. The downloaded file will then open within a new tab in the browser.

!!! warning ""

Rendering the full report requires the other folders from within `quast_results/` to also be downloaded and available in the same directory as `report.html`. Unfortunately, the Jupyter hub environment does not appear to currently support downloading entire folders using this method.

An example of the `MetaQUAST` output files are also available for download. You will need to download both [references](../resources/quast_references.zip) and [results](../resources/quast_results_sans_reference.zip). Unzip both within the same directory.

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