Useful links

Jump to bottom

Arnold Kuzniar edited this page Jul 4, 2018 · 18 revisions

Application-level CPU profiling

Roofline Performance Model

https://computing.llnl.gov/tutorials/parallel_comp/

https://hpc.nih.gov/apps/#ngs

https://computing.llnl.gov/tutorials/parallel_comp/

https://info.hpc.sussex.ac.uk/hpc-guide

https://hpc.oit.uci.edu/

SGE Quick Reference

SGE tutorial for beginners

SLURM tutorial (1,2)

SGE-SLURM conversion table

Intel's ThreadChecker

NumPy/SciPy with Intel MKL

Snakemake workflows

dbVar: overview of structural variation

Database of Genomic Variants (DGV)

Database of Genomic Variants archive (DGVa)

European Variation Archive (EVA)