Added option to create links of scripts in installation #580
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Build Xmipp | |
| on: | |
| pull_request: | |
| jobs: | |
| build: | |
| strategy: | |
| matrix: | |
| os: | |
| - 'ubuntu-latest' | |
| cuda: | |
| - {version: '11.8.0', method: 'network'} | |
| - {version: '12.2.2', method: 'network'} | |
| - {version: 'None'} | |
| compiler: | |
| - {cc: gcc, cxx: g++} | |
| include: | |
| - os: 'ubuntu-20.04' | |
| cuda: {version: '11.3.1', method: 'network'} | |
| compiler: {cc: gcc-9, cxx: g++-9, update-alternatives: True} | |
| - os: 'ubuntu-20.04' | |
| cuda: {version: '10.2.89', method: 'local'} | |
| compiler: {cc: gcc-8, cxx: g++-8, update-alternatives: True} | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| SEND_INSTALLATION_STATISTICS: "False" | |
| steps: | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libfftw3-dev libopenmpi-dev libhdf5-dev libtiff5-dev libsqlite3-dev default-jdk git cmake openmpi-bin ${{ matrix.compiler.cc }} ${{ matrix.compiler.cxx }} | |
| - if: ${{matrix.compiler.update-alternatives}} | |
| run: | | |
| sudo update-alternatives --install /usr/bin/gcc gcc /usr/bin/${{ matrix.compiler.cc }} 128 | |
| sudo update-alternatives --install /usr/bin/g++ g++ /usr/bin/${{ matrix.compiler.cxx }} 128 | |
| - uses: actions/setup-python@main | |
| with: | |
| python-version: '3.9.15' | |
| - run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install numpy | |
| - uses: Jimver/cuda-toolkit@master | |
| if: matrix.cuda.version != 'None' | |
| id: cuda-toolkit | |
| with: | |
| cuda: ${{ matrix.cuda.version }} | |
| method: ${{ matrix.cuda.method }} | |
| sub-packages: ${{ matrix.cuda.method=='network' && '["nvcc", "toolkit"]' || '[]' }} # Fake ternary operator | |
| - uses: actions/checkout@main | |
| with: | |
| fetch-depth: 0 | |
| ref: ${{ github.head_ref }} | |
| - name: Compile Xmipp will all dependencies in branch ${{ github.head_ref }} (if such branch exists, default is devel) | |
| env: | |
| BRANCH_NAME: ${{ github.head_ref }} | |
| run: | | |
| echo "XMIPP_LINK_TO_SCIPION=OFF" > xmipp.conf | |
| ./xmipp all -b $BRANCH_NAME --keep-output || (cat compilation.log && false) |