v2.4a

Minor release not affecting the program, just added tower.yml file for nextflow tower integration

v2.4

• added support for single-end fastq files (with both input_file and input_folder, see readme for info)
• simplified conda dependencies and set conda config to "strict" channel priority in Dockerfile to accelerate build

v2.3

• improve intermediate and output file naming and read group handling in input_file mode
• add automated tests for input_file mode
• update software versions in conda, Docker, and Singularity

v2.2

• Fixed STAR_mapqUnique parameter bug
• Added Singularity container
• Fixed profiles for docker and singularity releases

RNAseq-nf release 2.1

Improvements:

• added conda environment
• added input_file mode that handles multiplexed samples
• moved to GATK4 (beware, GATK versions < 4 not supported)
• added more information in multiqc reports, including possibility to provide a config file
• added multi-thread option for cutadapt (beware, cutadapt versions < 1.15 not supported)
• added RSeQC reports (clipping profile and junction saturation), including lane specific reports in case of multiplexed samples

RNAseq-nf

First release of IARCbioinfo's RNA seq pre-processing and analysis workflow