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@ICGC-TCGA-PanCancer

ICGC-TCGA-PanCancer

This collection of repositories were developed for the purpose of processing data for the PanCancer project.

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  1. TumorType-WGS TumorType-WGS Public

    Classifying tumor types based on Whole Genome Sequencing (WGS) data

    R 46 22

  2. pcawg_delly_workflow pcawg_delly_workflow Public

    A mirror of https://bitbucket.org/weischen/pcawg-delly-workflow

    Python 18 8

  3. CGP-Somatic-Docker CGP-Somatic-Docker Public

    Dockerised and simplified version of SeqWare-CGP-SomaticCore

    Java 14 9

  4. PCAP-core PCAP-core Public

    Legacy, see cancerit/PCAP-core: NGS reference implementations and helper code for the IGCG/TCGA Pan-Cancer Analysis Project

    Perl 13 14

  5. Seqware-BWA-Workflow Seqware-BWA-Workflow Public

    This is the BWA workflow used in the PanCancer project used to allign all the BAM files.

    Perl 11 11

  6. pcawg-colour-palette pcawg-colour-palette Public

    For mapping terms to standardized colours

    R 10 2

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