cran submission

IndrajeetPatil · Jan 29, 2020 · 8d9fe84 · 8d9fe84 · lintr-bot · Jan 29, 2020
1 parent de42720
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Showing 64 changed files with 681 additions and 676 deletions.
diff --git a/API b/API
@@ -2,7 +2,7 @@ bf_contingency_tab(data, x, y = NULL, counts = NULL, ratio = NULL, sampling.plan
 bf_corr_test(data, x, y, bf.prior = 0.707, caption = NULL, output = "null", k = 2, ...)
 bf_expr(bf.df, k = 2, output = "null", caption = NULL, ...)
 bf_extractor(bf.object, ...)
-bf_meta(data, d = prior, norm, c(mean = 0, sd = 0.3), tau = prior, invgamma, c(shape = 1, scale = 0.15), k = 2, caption = NULL, messages = TRUE, ...)
+bf_meta(data, d = prior, norm, c(mean = 0, sd = 0.3), tau = prior, invgamma, c(shape = 1, scale = 0.15), k = 2, output = "null", caption = NULL, messages = TRUE, ...)
 bf_oneway_anova(data, x, y, bf.prior = 0.707, caption = NULL, output = "null", paired = FALSE, k = 2, ...)
 bf_ttest(data, x, y = NULL, test.value = 0, paired = FALSE, bf.prior = 0.707, caption = NULL, output = "null", k = 2, ...)
 expr_anova_bayes(data, x, y, paired = FALSE, bf.prior = 0.707, k = 2, ...)
@@ -11,6 +11,7 @@ expr_anova_parametric(data, x, y, paired = FALSE, effsize.type = "unbiased", par
 expr_anova_robust(data, x, y, paired = FALSE, tr = 0.1, nboot = 100, conf.level = 0.95, conf.type = "norm", k = 2, stat.title = NULL, messages = TRUE, ...)
 expr_contingency_tab(data, x, y = NULL, counts = NULL, ratio = NULL, nboot = 100, paired = FALSE, stat.title = NULL, legend.title = NULL, conf.level = 0.95, conf.type = "norm", bias.correct = TRUE, k = 2, messages = TRUE, ...)
 expr_corr_test(data, x, y, nboot = 100, beta = 0.1, type = "pearson", bf.prior = 0.707, conf.level = 0.95, conf.type = "norm", k = 2, stat.title = NULL, messages = TRUE, ...)
+expr_meta_bayes(data, d = prior, norm, c(mean = 0, sd = 0.3), tau = prior, invgamma, c(shape = 1, scale = 0.15), k = 2, messages = TRUE, ...)
 expr_meta_parametric(data, conf.level = 0.95, k = 2, messages = FALSE, output = "subtitle", caption = NULL, ...)
 expr_meta_robust(data, random = "mixture", k = 2, messages = FALSE, ...)
 expr_t_bayes(data, x, y, bf.prior = 0.707, paired = FALSE, k = 2, ...)
@@ -20,3 +21,4 @@ expr_t_parametric(data, x, y, paired = FALSE, effsize.type = "g", effsize.noncen
 expr_t_robust(data, x, y, tr = 0.1, paired = FALSE, nboot = 100, conf.level = 0.95, conf.type = "norm", k = 2, stat.title = NULL, messages = TRUE, ...)
 expr_template(no.parameters, stat.title = NULL, statistic.text, stats.df, effsize.text, effsize.df, n, conf.level = 0.95, k = 2, k.parameter = 0, k.parameter2 = 0, n.text = NULL, ...)
 long_to_wide_converter(data, x, y, paired = TRUE)
+specify_decimal_p(x, k = 3, p.value = FALSE)
diff --git a/CRAN-RELEASE b/CRAN-RELEASE
@@ -1,2 +1,2 @@
-This package was submitted to CRAN on 2020-01-22.
-Once it is accepted, delete this file and tag the release (commit 2dd7fe859a).
+This package was submitted to CRAN on 2020-01-29.
+Once it is accepted, delete this file and tag the release (commit de42720a84).
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Type: Package
 Package: statsExpressions
 Title: Expressions with Statistical Details
-Version: 0.2.1.9000
+Version: 0.3.0
 Authors@R: 
     c(person(given = "Indrajeet",
              family = "Patil",

diff --git a/NEWS.md b/NEWS.md
@@ -1,4 +1,4 @@
-# statsExpressions 0.2.1.9000
+# statsExpressions 0.3.0
 
 NEW FEATURES
 

diff --git a/R/helpers_anova_expressions.R b/R/helpers_anova_expressions.R
@@ -560,7 +560,7 @@ expr_anova_robust <- function(data,
           ",",
           df2,
           ") = ",
-          estimate,
+          statistic,
           ", ",
           italic("p"),
           " = ",
@@ -571,7 +571,7 @@ expr_anova_robust <- function(data,
           n
         ),
         env = list(
-          estimate = specify_decimal_p(x = stats_df$test[[1]], k = k),
+          statistic = specify_decimal_p(x = stats_df$test[[1]], k = k),
           df1 = specify_decimal_p(x = stats_df$df1[[1]], k = k),
           df2 = specify_decimal_p(x = stats_df$df2[[1]], k = k),
           p.value = specify_decimal_p(x = stats_df$p.value[[1]], k = k, p.value = TRUE),

diff --git a/README.Rmd b/README.Rmd
@@ -25,12 +25,12 @@ knitr::opts_chunk$set(
 
 Package | Status | Usage | GitHub | References
 ----------------- | ----------------- | ----------------- | ----------------- | -----------------
-[![CRAN_Release_Badge](http://www.r-pkg.org/badges/version-ago/statsExpressions)](https://CRAN.R-project.org/package=statsExpressions) | [![Build Status](https://travis-ci.org/IndrajeetPatil/statsExpressions.svg?branch=master)](https://travis-ci.org/IndrajeetPatil/statsExpressions) | [![Daily downloads badge](https://cranlogs.r-pkg.org/badges/last-day/statsExpressions?color=blue)](https://CRAN.R-project.org/package=statsExpressions) | [![GitHub version](https://img.shields.io/badge/GitHub-0.2.1.9000-orange.svg?style=flat-square)](https://github.com/IndrajeetPatil/statsExpressions/) | [![Website](https://img.shields.io/badge/website-statsExpressions-orange.svg?colorB=E91E63)](https://indrajeetpatil.github.io/statsExpressions/)
+[![CRAN_Release_Badge](http://www.r-pkg.org/badges/version-ago/statsExpressions)](https://CRAN.R-project.org/package=statsExpressions) | [![Build Status](https://travis-ci.org/IndrajeetPatil/statsExpressions.svg?branch=master)](https://travis-ci.org/IndrajeetPatil/statsExpressions) | [![Daily downloads badge](https://cranlogs.r-pkg.org/badges/last-day/statsExpressions?color=blue)](https://CRAN.R-project.org/package=statsExpressions) | [![GitHub version](https://img.shields.io/badge/GitHub-0.3.0.9000-orange.svg?style=flat-square)](https://github.com/IndrajeetPatil/statsExpressions/) | [![Website](https://img.shields.io/badge/website-statsExpressions-orange.svg?colorB=E91E63)](https://indrajeetpatil.github.io/statsExpressions/)
 [![CRAN Checks](https://cranchecks.info/badges/summary/statsExpressions)](https://cran.r-project.org/web/checks/check_results_statsExpressions.html) | [![AppVeyor Build Status](https://ci.appveyor.com/api/projects/status/github/IndrajeetPatil/statsExpressions?branch=master&svg=true)](https://ci.appveyor.com/project/IndrajeetPatil/statsExpressions) | [![Weekly downloads badge](https://cranlogs.r-pkg.org/badges/last-week/statsExpressions?color=blue)](https://CRAN.R-project.org/package=statsExpressions) | [![Forks](https://img.shields.io/badge/forks-`r itdepends:::get_github_info("statsExpressions")$forks[[1]]`-blue.svg)](https://github.com/IndrajeetPatil/statsExpressions/) | [![Rdoc](https://www.rdocumentation.org/badges/version/statsExpressions)](https://www.rdocumentation.org/packages/statsExpressions)
-[![minimal R version](https://img.shields.io/badge/R%3E%3D-3.5.0-6666ff.svg)](https://cran.r-project.org/) | [![lifecycle](https://img.shields.io/badge/lifecycle-maturing-blue.svg)](https://www.tidyverse.org/lifecycle/) | [![Monthly downloads badge](https://cranlogs.r-pkg.org/badges/last-month/statsExpressions?color=blue)](https://CRAN.R-project.org/package=statsExpressions) | [![Github Issues](https://img.shields.io/badge/issues-`r itdepends:::get_github_info("statsExpressions")$open_issues[[1]]`-red.svg)](https://github.com/IndrajeetPatil/statsExpressions/issues) | [![vignettes](https://img.shields.io/badge/vignettes-0.2.1-orange.svg?colorB=FF5722)](https://CRAN.R-project.org/package=statsExpressions/vignettes/)
+[![minimal R version](https://img.shields.io/badge/R%3E%3D-3.5.0-6666ff.svg)](https://cran.r-project.org/) | [![lifecycle](https://img.shields.io/badge/lifecycle-maturing-blue.svg)](https://www.tidyverse.org/lifecycle/) | [![Monthly downloads badge](https://cranlogs.r-pkg.org/badges/last-month/statsExpressions?color=blue)](https://CRAN.R-project.org/package=statsExpressions) | [![Github Issues](https://img.shields.io/badge/issues-`r itdepends:::get_github_info("statsExpressions")$open_issues[[1]]`-red.svg)](https://github.com/IndrajeetPatil/statsExpressions/issues) | [![vignettes](https://img.shields.io/badge/vignettes-0.3.0-orange.svg?colorB=FF5722)](https://CRAN.R-project.org/package=statsExpressions/vignettes/)
 [![GitHub code size in bytes](https://img.shields.io/github/languages/code-size/IndrajeetPatil/statsExpressions.svg)](https://github.com/IndrajeetPatil/statsExpressions) | [![Coverage Status](https://coveralls.io/repos/github/IndrajeetPatil/statsExpressions/badge.svg?branch=master)](https://coveralls.io/github/IndrajeetPatil/statsExpressions?branch=master) | [![Total downloads badge](https://cranlogs.r-pkg.org/badges/grand-total/statsExpressions?color=blue)](https://CRAN.R-project.org/package=statsExpressions) | [![Github Stars](https://img.shields.io/github/stars/IndrajeetPatil/statsExpressions.svg?style=social&label=Github)](https://github.com/IndrajeetPatil/statsExpressions) | [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.2074621.svg)](https://doi.org/10.5281/zenodo.3386122)
 [![Licence](https://img.shields.io/badge/licence-GPL--3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0.en.html) | [![Codecov test coverage](https://codecov.io/gh/IndrajeetPatil/statsExpressions/branch/master/graph/badge.svg)](https://codecov.io/gh/IndrajeetPatil/statsExpressions?branch=master) | [![HitCount](http://hits.dwyl.io/IndrajeetPatil/statsExpressions.svg)](http://hits.dwyl.io/IndrajeetPatil/statsExpressions) | [![Last-changedate](https://img.shields.io/badge/last%20change-`r gsub('-', '--', Sys.Date())`-yellowgreen.svg)](https://github.com/IndrajeetPatil/statsExpressions/commits/master) | [![GitHub last commit](https://img.shields.io/github/last-commit/IndrajeetPatil/statsExpressions.svg)](https://github.com/IndrajeetPatil/statsExpressions/commits/master)
-[![status](https://tinyverse.netlify.com/badge/statsExpressions)](https://CRAN.R-project.org/package=statsExpressions) | [![Covrpage Summary](https://img.shields.io/badge/covrpage-Last_Build_2020_01_24-yellowgreen.svg)](https://github.com/IndrajeetPatil/statsExpressions/blob/master/tests/README.md) | [![Gitter chat](https://badges.gitter.im/gitterHQ/gitter.png)](https://gitter.im/statsExpressions/community) | [![Project Status](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active) | [![contributions welcome](https://img.shields.io/badge/contributions-welcome-brightgreen.svg?style=flat)](https://github.com/IndrajeetPatil/statsExpressions/issues)
+[![status](https://tinyverse.netlify.com/badge/statsExpressions)](https://CRAN.R-project.org/package=statsExpressions) | [![Covrpage Summary](https://img.shields.io/badge/covrpage-Last_Build_2020_01_29-yellowgreen.svg)](https://github.com/IndrajeetPatil/statsExpressions/blob/master/tests/README.md) | [![Gitter chat](https://badges.gitter.im/gitterHQ/gitter.png)](https://gitter.im/statsExpressions/community) | [![Project Status](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active) | [![contributions welcome](https://img.shields.io/badge/contributions-welcome-brightgreen.svg?style=flat)](https://github.com/IndrajeetPatil/statsExpressions/issues)
 
 # Introduction
 
@@ -43,14 +43,14 @@ create these expressions.
 
 # Installation
 
-To get the latest, stable `CRAN` release (`0.2.1`):
+To get the latest, stable `CRAN` release (`0.3.0`):
 
 ```{r installationCRAN, eval = FALSE}
 install.packages(pkgs = "statsExpressions")
 ```
 
 You can get the **development** version of the package from `GitHub`
-(`0.2.1.9000`). To see what new changes (and bug fixes) have been made to the
+(`0.3.0.9000`). To see what new changes (and bug fixes) have been made to the
 package since the last release on `CRAN`, you can check the detailed log of
 changes here: <https://indrajeetpatil.github.io/statsExpressions/news/index.html>