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Update README.md
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Ingefast authored Nov 10, 2022
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Expand Up @@ -204,7 +204,7 @@ With **sRNA.correlogram_plotter.r** it is possible to analyse the table **total_
*Figure 1*. (A) bedGraph files of a wildtype in *Capsella* for different sRNA sizes. (B) Correlogram of 24nt sRNA values over genes in three conditions with two replicates each. (C) NMDS diagram of the same dataset.

## 2. sRNA size distribution over over genes and transposable elements.
Understanding the relative importance of sRNA of particular sizes on the expression of genes and TEs is central for any sRNA study. The script plots the abundance (RPM) of sRNA reads of different size over selected genomic features (genes and TEs). Inputs are the previously generated **gene.reads.txt** and **te.reads.txt** files. Additionally, a file with total number of mapped reads for each sample has to be created manually (**read_n_baseline.txt**) in order to establish a baseline for normalisation,
Understanding the relative importance of sRNA of particular sizes on the expression of genes and TEs is central for any sRNA study. The script **sRNA.size_distribution_plotter.r** plots the abundance (RPM) of sRNA reads of different size over selected genomic features (genes and TEs). Inputs are the previously generated **gene.reads.txt** and **te.reads.txt** files. Additionally, a file with total number of mapped reads for each sample has to be created manually (**read_n_baseline.txt**) in order to establish a baseline for normalisation,

```
sample_name mapped
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