Mewu/fix issues (#2) #16
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| name: Render Quarto Files and Deploy to GitHub Pages | |
| on: | |
| push: | |
| branches: | |
| - main | |
| paths-ignore: | |
| - '.devcontainer/**' | |
| workflow_dispatch: # Manual trigger | |
| jobs: | |
| render_quarto: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| # - name: Build Docker image | |
| # run: | | |
| # docker build -t demo-quarto-image . | |
| - name: Create gallery directory on the host | |
| run: | | |
| echo 'Creating gallery directory...' | |
| mkdir -p gallery && chmod -R 777 gallery | |
| echo 'gallery directory created.' | |
| - name: Run Quarto in Docker container | |
| run: | | |
| docker run --rm -v ${{ github.workspace }}:/workspace -w /workspace mewu/data_access:latest bash -c " | |
| source /opt/venv/bin/activate | |
| echo 'activated virtualenv.' | |
| chmod +x /workspace/r/install_quarto_extensions.expect | |
| /workspace/r/install_quarto_extensions.expect | |
| quarto list extensions | |
| echo 'Check Quarto status:' | |
| quarto check | |
| echo 'Check R script path:' | |
| which Rscript | |
| FOLDERS=(python r) | |
| echo 'Folders to process: \${FOLDERS[@]}' | |
| for FOLDER in \"\${FOLDERS[@]}\"; do | |
| echo \"Searching for .qmd and .ipynb files in /workspace/\$FOLDER...\" | |
| find \"/workspace/\$FOLDER\" \( -name '*.qmd' -o -name '*.ipynb' \) | while read -r file; do | |
| echo \"Processing file: \$file\" | |
| # Remove the /workspace prefix from the file path | |
| relative_dir=\$(dirname \"\${file#'/workspace/'}\") | |
| # Install extension to the folder directly | |
| pushd \$relative_dir | |
| /workspace/r/install_quarto_extensions.expect | |
| popd | |
| target_dir=\"/workspace/gallery/\$relative_dir\" | |
| echo \"Creating target directory: \$target_dir\" | |
| mkdir -p \"\$target_dir\" && echo \"Directory \$target_dir created.\" | |
| echo \"Attempting to render \$file with execution...\" | |
| if quarto render \"\$file\" --to html --output-dir \"\$target_dir\"; then | |
| echo \"Successfully rendered \$file with execution.\" | |
| else | |
| echo \"Failed to render \$file with execution. Rendering without execution...\" | |
| if quarto render \"\$file\" --to html --no-execute --output-dir \"\$target_dir\"; then | |
| echo \"Successfully rendered \$file without execution.\" | |
| else | |
| echo \"Rendering failed for \$file, even without execution.\" | |
| fi | |
| fi | |
| done | |
| done" | |
| - name: Generate Index HTML | |
| run: | | |
| ls -laR gallery | |
| echo "<html><body><h1>Gallery Index</h1><ul>" > gallery/index.html | |
| find gallery -name "*.html" -not -name "index.html" | while read -r file; do | |
| # Remove the 'gallery/' prefix from the file path | |
| relative_path="${file#gallery/}" | |
| file_name=$(basename "$file") | |
| echo "<li><a href=\"./$relative_path\">$relative_path</a></li>" >> gallery/index.html | |
| done | |
| echo "</ul></body></html>" >> gallery/index.html | |
| - name: Upload HTML output | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: gallery | |
| path: gallery/ | |
| - name: Set up Git user | |
| run: | | |
| git config --global user.name 'github-actions[bot]' | |
| git config --global user.email 'github-actions[bot]@users.noreply.github.com' | |
| - name: Deploy to GitHub Pages | |
| uses: peaceiris/actions-gh-pages@v4 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: ./gallery # Path to the folder that you want to publish (the gallery folder) | |
| publish_branch: docs # The branch used for GitHub Pages |