add more dependecies

.devcontainer/postCreateCommand.sh

@@ -9,18 +9,18 @@ if [ -f "python/requirements.txt" ]; then
 fi
 
 # Install R dependencies
-if [ -f "R/install_packages.R" ]; then
-    Rscript R/install_packages.R
+if [ -f "r/install_packages.R" ]; then
+    Rscript r/install_packages.R
 fi
 
 # This may be done by the user
 # Set up renv for R
-#if [ -f "R/renv.lock" ]; then
-#    cd R && R -e 'renv::restore()'
+#if [ -f "r/renv.lock" ]; then
+#    cd r && R -e 'renv::restore()'
 #fi
 
 # change the default working directory for RStudio
-echo "session-default-working-dir=$CODESPACE_VSCODE_FOLDER" >> /etc/rstudio/rsession.conf
+echo "session-default-working-dir=${CODESPACE_VSCODE_FOLDER}" >> /etc/rstudio/rsession.conf
 
 rstudio-server start && jupyter lab --ip=0.0.0.0 --no-browser --allow-root --NotebookApp.token=''
 

Dockerfile

@@ -16,8 +16,15 @@ RUN apt-get update && apt-get install -y \
     libxml2-dev \
     libjpeg-dev \
     libpng-dev \
+    libtiff5-dev \
+    libproj-dev \
+    libgdal-dev \
     libxt-dev \
     libarchive-dev \
+    libfontconfig1-dev \
+    libharfbuzz-dev \
+    libfribidi-dev \
+    libfreetype6-dev \
     gdebi-core \
     software-properties-common \
     ffmpeg \
@@ -44,6 +51,10 @@ ENV PATH="/opt/venv/bin:$PATH"
 # Create an IPython kernel for the virtual environment
 RUN /opt/venv/bin/python -m ipykernel install --user --name=venv --display-name "Python 3.12 (venv)"
 
+# Install latest Quarto
+RUN wget https://github.com/quarto-dev/quarto-cli/releases/download/v1.5.57/quarto-1.5.57-linux-amd64.deb
+RUN dpkg -i quarto-1.5.57-linux-amd64.deb
+
 # Expose ports for RStudio (8787) and Jupyter (8888)
 
 #WORKDIR /workspaces
@@ -54,5 +65,12 @@ EXPOSE 8888
 # Install renv globally for all users
 RUN R -e "install.packages('renv', repos='https://cran.rstudio.com/')"
 
+# Add /usr/local/bin to the PATH for all users
+ENV PATH="/usr/local/bin:$PATH"
+
+# Ensure the rstudio user's profile contains the updated PATH
+RUN echo 'export PATH="/usr/local/bin:$PATH"' >> /home/rstudio/.bashrc
+RUN usermod -aG sudo rstudio
+
 # CMD to start both Jupyter and RStudio
 #CMD ["bash", "-c", "rstudio-server start; jupyter lab --ip=0.0.0.0 --no-browser --allow-root --NotebookApp.token=''"]

r/install_packages.R

@@ -8,7 +8,7 @@ if (.Platform$OS.type == "unix") {
 
 
 pkgnames <- c(
-'devtools', 'DT', 
+'devtools', 'DT', 'languageserver', 'styler', 'httpgd',
 'shiny', 'shinyjs', 'shinyalert', 'shinyWidgets', 'shinythemes', 'shinycssloaders', 'shinyBS', 'shinylive',
 'dplyr','ggplot2', 'plotly', 'tidyr', 'stringr', 'logr', 'tidyverse', 
 'knitr', 'rmarkdown'