Skip to content

Commit

Permalink
Update README.md
Browse files Browse the repository at this point in the history
  • Loading branch information
JLTrincado authored Jan 24, 2018
1 parent b0a9c86 commit a50b560
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion README.md
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@ These are the main scripts of the pipeline:
and transform it to bed file. There is another version available for Ensembl annotation (format_gtf.py)
- get_fasta.py: from [MoSEA](https://github.com/comprna/MoSEA) software, extract the fasta sequence associated to each exon
- create_paths.py: get all the possible paths with the info given. It returns the fasta sequence associated to each combination.
- extract_orfs.py: Get all possible ORFs associated to each sequence
- extract_orfs.py: Get all possible ORFs associated to each sequence. Written by Dr. Jorge Ruiz-Orera.
- get_distance_to_ss.py: Given the ORFs per transcript (take the longest per transcript), the sequences of each transcript and the position of the ss, get the relative distance to this ss
- test_NMDs.py: apply a Fisher test for each pair of exons, in order to test independence between all the exons respect to the NMD condition

Expand Down

0 comments on commit a50b560

Please sign in to comment.